Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05140 ATGGGTTTTTTGTTGAAAGAAACTTTGAAGACTCTGTGCGGTCGGAATCAGTGGTCTTATGCTGTGTTCTGGAAGATCGGTTGCAACAATTCAAAGCTATTAATCTGGGAAGAATGCTATTATGATCCTTTGTCATGTCCTTTCCCTCCAAGCTCTTTTTGGATACCTAATTTGCCTAATCAGAATGGGGAAGGATGCTGGTTTTCTTCAGAGTCTCAAGTAGGGATTCAAGAGGACAGAATCTCTTCTTTGATTAACAAAATGATAGTAAATAATTCAGTCATTGTTGCAGGTGAAGGTATAATTGGACGGGCTGCGTTTACAGGCAGCCATCAGTGGATTCTTTTGAACAATTTCACTAAAGATGCATATCCCCCTGAGGTTTATGCTGAAGTGCATCACCAATTTTCAGCTGGAATGCAGACAGTAACAGTTATTCCTGTGCTCCCTCATGGGGTTGTTCAACTTGGTTCTTTCTTGCCAATAATGGAGAATATTGGATTTGTGAATGATGTGAAGAGCTTGATCTTGCAATTGGGATGTATTCCTGGTGCCCTACTATCCGAAGACTACTCAGCAAAACTTTCAAATGAAAGACTTGCTGGACCTGCTATTGCTGGTGTGCCTGTGTCTGTTGATCCACCAGTCATTACCTCAAATTCCACTCACTCAGTAGCTAATGGCTCCAATCAGCATTGTAATTCCTCTCATGCTTCAAGGCCTACTGTTCAGACACCCTGTCCTCTGAGGGGAGAAATAAATACTTGCCAGGGTTCTGAATTGACTCCCCAGACCCATAACCTGAACCAGATATCCAATAACATTTGTCAAGCAAAGTTAATTTCAATGAGTAAAACAGGCTTTCCTGGCCAACGAGAGAATAGAGTTGTTGAGGCTGAAGTGATACCCTCAAATTTTGGTTCATGCTTGCAACAGCAATCAGTTTCATATAATGCAAGATCTGCATTCAATAACTTATCTGGTTCTGGGCCTCTTGGTCAATCAGGTCTTAGTGATCATAGTCTAAAATGTATGGATCAACAAATTATGTCAGCCATTGGGAATCGAGATCATGTTAATCCTTGTATTAATGCATCAAGTACGGTAAACATGTCTCAACCAAAAACAGATGGAGGCCATATACTGAGCCATAATCTAAGTTCTGGCAGTACTTCATTACTCAGAGGAATCCCAGTACATGGTGGGATGAGTAGTCTTTTGAGGAAAAATCTGAGTACTAGGTCAAAATCTCCCAAACTATATGCGGGTGATTTATCTGGTAAACATGAAGTTGGGATTGGACTTCAAAATGATGTTTCAACTAAAGCTGGGGGTTATTCTCTGGCAAGTTTGACTAGTCAATCGGGCACCTTTCCCATGCCTCTAGAAGGTTCTGATCAGAAGATTCTCCCTGTAGATATAAAGTCTGCTTCAATTGATCAAAAGATACACTATGATTTGCTTCAGGCTCCTAACATCCCATCTTTTCATGTTAAGGAGCATGTGCCTAATAGTGCTCAAATCCCTGGTTTTGTCCATGATTGCCTTGATAAAGATGGTACCAGTCAATCTATAATGACAATGAATCCTAAACATGAACAACCTTGTGCTCAACCTCCATCAGGGGACGACCTGTTTGATGTTTTAGGTGTGGATTTTAAAAACAAGCTGCTGAATGGAAAATGGAATAAACTGCTTGCTGATGAACCAGATGCTAATGCAGAAAATATGGTTAAAAAGGAAACATGTATGAATATGCAGGGTATAAATTCTGATTGTTATTCAGTTCATGAAACAATATCAGACAGTGGCATCTTTTCTGGGATGGGAACAGACCACCTCTTGGATGCTGTGGTCTCAAAGGCCAAACCTGTTGTGAAGCAGAATTCTGATGACATGTCTTGCAGGACAACATTGACAGTGAATAGTACTTCCTCTGTTCCCTCTCCTGCATGCAAACAGGTTATGTCTGGTCAGACTCAAGGGGGATTGTTTGATTTCCCAAAGAATGGTGGTAAAATAGGTGCTGTAGAAACCAGTTCTCTAAGGTCTGGATGTAGCAAGGATGATGCTGGAAATTGTTCTCAAACTACTTCTATATATGGTTCTCAACTTAGTTCATGGGTTGAGAATGGTGGCAATGTGAAGTGTGAAAATAGTGTTTCAACTGGATACTCTAAGCGCTCAAATGATGGTTGCAAACCAAATCGAAAAAGACTCAAACCAGGAGAGAATCCCAGGCCTCGACCTAAAGATCGCCAAATGATTCAAGATCGTGTGAAAGAGTTACGAGAAATTGTACCAAATGGAGCAAAGTGTAGCATAGATGCACTGCTGGAACGGACCATTAAGCATATGCTTTTCTTGCAAAGTGTGACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAGTCTAAGATGATTAGTAAGGAAGGTGGGCTGCTTTTGAAAGACAACTTTGAGGGAGGCGCTACCTGGGCATACGAGGTTGGCTCCCAATCATTGGTCTGCCCTATTATAGTTGAAGATTTAAATGCTCCTCGTCAGATGCTAGTGGAGATGCTCTGTGAGGATCGAGGTTTCTTTCTGGAAATAGCTGACCTAATCAGAGGATTAGGTTTAACCATCCTCAAGGGTGTAATGGAAGCCCACAATGACAAAATCTGGGCACGCTTTGCAGTTGAGGCAAATAGGGATGTAACGAGGATGGAAATATTCATGTCACTTGTTCGTCTTTTGGAGCAAACGGTGAAGGGTGATGCATCTTCATCCAATGCAATTGATAACATGATGGTTTATCACTCTTTCCCACAAGCTACTCAAATACCAGCAACTGGAAGGCCTAGTAGTTTGCAATGA 2859 0.4148 MGFLLKETLKTLCGRNQWSYAVFWKIGCNNSKLLIWEECYYDPLSCPFPPSSFWIPNLPNQNGEGCWFSSESQVGIQEDRISSLINKMIVNNSVIVAGEGIIGRAAFTGSHQWILLNNFTKDAYPPEVYAEVHHQFSAGMQTVTVIPVLPHGVVQLGSFLPIMENIGFVNDVKSLILQLGCIPGALLSEDYSAKLSNERLAGPAIAGVPVSVDPPVITSNSTHSVANGSNQHCNSSHASRPTVQTPCPLRGEINTCQGSELTPQTHNLNQISNNICQAKLISMSKTGFPGQRENRVVEAEVIPSNFGSCLQQQSVSYNARSAFNNLSGSGPLGQSGLSDHSLKCMDQQIMSAIGNRDHVNPCINASSTVNMSQPKTDGGHILSHNLSSGSTSLLRGIPVHGGMSSLLRKNLSTRSKSPKLYAGDLSGKHEVGIGLQNDVSTKAGGYSLASLTSQSGTFPMPLEGSDQKILPVDIKSASIDQKIHYDLLQAPNIPSFHVKEHVPNSAQIPGFVHDCLDKDGTSQSIMTMNPKHEQPCAQPPSGDDLFDVLGVDFKNKLLNGKWNKLLADEPDANAENMVKKETCMNMQGINSDCYSVHETISDSGIFSGMGTDHLLDAVVSKAKPVVKQNSDDMSCRTTLTVNSTSSVPSPACKQVMSGQTQGGLFDFPKNGGKIGAVETSSLRSGCSKDDAGNCSQTTSIYGSQLSSWVENGGNVKCENSVSTGYSKRSNDGCKPNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIKHMLFLQSVTKHADKLKQTGESKMISKEGGLLLKDNFEGGATWAYEVGSQSLVCPIIVEDLNAPRQMLVEMLCEDRGFFLEIADLIRGLGLTILKGVMEAHNDKIWARFAVEANRDVTRMEIFMSLVRLLEQTVKGDASSSNAIDNMMVYHSFPQATQIPATGRPSSLQ. 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05140 952 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 740 789 IPR011598 GO:0046983
Seca3g05140 952 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 946 IPR043561 GO:0003700|GO:0006355
Seca3g05140 952 CDD bHLH_AtLHW_like 744 813 - -
Seca3g05140 952 MobiDBLite consensus disorder prediction 225 244 - -
Seca3g05140 952 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 175 IPR025610 -
Seca3g05140 952 MobiDBLite consensus disorder prediction 731 755 - -
Seca3g05140 952 MobiDBLite consensus disorder prediction 721 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05140 Seca-Chr3 100909716 100917259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05140 543 937 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 52.618 1.22e-113 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05140 - - gmx:100787748 1452.96