Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05126 ATGGGGTCTCGAATGGATCAATATGAGATCATGGAGCAGATCGGTCGCGGAGCGTTTGGTGCTGCTATTCTCGTTAACCACAAGGCGGAGAAGAAGAAATACGTTTTGAAAAAAATCAGGCTCGCTCGGCAAACTGAACGCTGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTAGAATTCAGCACCCTTACATTGTGGAATTCAAGGAGGCTTGGGTTGAGAAGGGTTGTTATGTCTGCATTGTAACTGGATACTGTGAAGGTGGAGACATGGCTGCGTTGATGAAAAAATCAAATGGGCTCTACTTTCCCGAGGAGAAACTCTGCAAGTGGTTTACTCAAATACTGTTGGCAGTAGAATACCTGCATTCAAATTTTGTTTTACACCGTGACCTAAAGTGTTCTAACATCTTTCTCACCAAGGATCAGGATGTTCGCCTAGGGGATTTTGGGCTTGCTAAGACACTAAAAGCAGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAATTACATGTGTCCTGAACTTCTTGCAGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGGTGCTGTATATATGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGATATGGCTGGACTGATAAGCAAAATAAATCGTTCTTCTATTGGTCCTTTGCCTCCCTGTTATTCCCCATCCTTGAAAACACTGATAAAGGGCATGCTGAGAAAAAATCCTGAGCATCGTCCAACAGCATCTGAAATCCTAAAGCACCCTTATTTGCAGCCTTATGTTCATCAATATTGTTCATCTTTCTGTCCTCCAGCATCCTGTTTTCCTGAAAAGCCAATTTCAGCTGTCCATGATCCTCAAAAAAATATGGCAGGAAGTCAAAACAGTAGTAGTTCGAGTAGTGACAAAGGTAGTTCGATGTCAAGTGAGAGAAACATTGCAAAAGTAGTGCCAAAGTGTGGTAACAAAATCACTGAGATAGACCTGCCTAGTGAAGATGGAAATGGCTCCAGTAATGTTAGCACAAAAACAGATGAGCAGGAGGTTATGAAGCAAATTCATAATGAACACCATTCTAATGTTGTATCTAAGCAACCAAAAACAATTAAGAATGTAATGATGGCATTGAGAGATGAAAAAGTTAGAGAGACAAGTTCTCCAATGAGAGGCAATCGCATAAAGGCTGGTGGTATATCAACACAGAAAATAAATACAGAGACATCATCCAAACTGCCAAAACCTAATCCTTTTGTTTCTGGTTTGAAGCCTAATTTAGAGGTGCCAACTATTGCGCCTTCAAAAGCAACCCCTGATTCTGCAAAACAAATGCAGGGATCACATACTTCAAAGCATCAGTTACCGATGATAGAATCCACACCAAAAACTAAACCTCGACACAATGTGATTTTAGCATCTGGTCCTATCAAACAAGTAGGAGGAGGTGGAGCTCCTGCCAAGCCAAAGCAAAAGTCTCCTCCAAGCTCACTTAAACCACCTTCGTTTCCAAGACGTGTAAGGCAGGCAGGGCTTGATGTTCCAAATGCAGCAAATGATACAGGAAACTTAAGTCCAAATAAAATTGCCCAGGAGCCTAAGATGAGCCACCATCAGTTGACCAATGGTCATCTAACACATGTTTCTAGAGAGATTGCTAGAGAGCCTTTGAAGGCTTTTGAAAGTAGTTCCAAAGGAATTCAAACAGACAGCAGCAATTCTGTCTCATCTTCAGTCTCTATTCAAGGATTCGAACTTTCTGACTTTGCAACCACTTTTATTGACTTGAGTGATTCAATACTTCCTGATCATGAGAGTTTAAACCATACTGAAAATGTGGAATCACGTCCAGACAGCAGTTCTTCTGAAAAATTGTCCGGGGAAACCTCTCTTGTTACACCAAATTTTCAGAATACAATTACTAGTAATGAGAAAGCAAGTCCTGGTTTAACTCTGGATCACTTAGTTCAGGATTCTAAGGTAATGTTTGCTTCTGATGATAGTTCTCTCACAAATCAAACAACTACATCTGTTGCCTCTGGGTGTGATAATATATCTGTAGATCCCTCTTCTGTAATCACACTAGAAATCAAAAACCTTCAAGATATTTCTAAGGAAATGACTTCAACCAAGTCTCTCAAACATCCTCTCCCCATTTCTGGAGAAAAATCTGTTTGTGAAGTGAATCCAGTAAGCCAGCCAAATAATAGGCCTGAAAAAGTTAGCCAGCCAAAACATATATGCATCTCCCCTGGTGATGACAAATTCATGGTAAGGGAAAGACCTGTGGCTGAAACTGCCCCTCTGATTATCTCTACAAAAATTTCAAGCCAGAAAGTTCTACAAGAAGAGAGAGGAACAGTTTTACAGAATCCAGCACCAGAAAGGCCAGCTTCTGGTCACCTTCCTCCAGCTTTTGATGATGTCATTCATGTTATACGCCATAGTAGTTATCGTGTGGGAAGTGAACTGCCAGTAAAGGAATCTGTGGAGATGGGAGTTCAAAACGCAGATGTCGGTAAATTTATCACCATTGCCAAGGATGATTTAGAAATGAAAAATGTGAGCACCCTTAAATCTTCAAATTGTTATGAAGCTACTAGCTTGAAGTCAAATATTTCTGATAATTTGGAAATTAGAAACTTGAGCACTCCTCCTAACTCAAAACCTTCCAGTTGCTCTGACTCTTTGAGCTTGAAATCAATTATTCCTGACCATCCTGGTGTTAAGGAACAAGATATGAAAAACCCTGATTCTCTAGTTTCAAAATCTGATCCCACTGACGATACCAAATATAACCCTCCTACAGCCAAAGAAGGAACACCAGCAAAGGAAACTTTAGATGTTAAATCTTCCAGGCAGAGAGCTGAGGCACTTGAAGGGCTGTTAGAATTGTCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTTTGAAGCCATTTGGAAAAGATCAGGTCTCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTAAAAGGATTGATGATTGGGGAAAGTGGTGGACGCTGTTAA 3057 0.4092 MGSRMDQYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAALMKKSNGLYFPEEKLCKWFTQILLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEILKHPYLQPYVHQYCSSFCPPASCFPEKPISAVHDPQKNMAGSQNSSSSSSDKGSSMSSERNIAKVVPKCGNKITEIDLPSEDGNGSSNVSTKTDEQEVMKQIHNEHHSNVVSKQPKTIKNVMMALRDEKVRETSSPMRGNRIKAGGISTQKINTETSSKLPKPNPFVSGLKPNLEVPTIAPSKATPDSAKQMQGSHTSKHQLPMIESTPKTKPRHNVILASGPIKQVGGGGAPAKPKQKSPPSSLKPPSFPRRVRQAGLDVPNAANDTGNLSPNKIAQEPKMSHHQLTNGHLTHVSREIAREPLKAFESSSKGIQTDSSNSVSSSVSIQGFELSDFATTFIDLSDSILPDHESLNHTENVESRPDSSSSEKLSGETSLVTPNFQNTITSNEKASPGLTLDHLVQDSKVMFASDDSSLTNQTTTSVASGCDNISVDPSSVITLEIKNLQDISKEMTSTKSLKHPLPISGEKSVCEVNPVSQPNNRPEKVSQPKHICISPGDDKFMVRERPVAETAPLIISTKISSQKVLQEERGTVLQNPAPERPASGHLPPAFDDVIHVIRHSSYRVGSELPVKESVEMGVQNADVGKFITIAKDDLEMKNVSTLKSSNCYEATSLKSNISDNLEIRNLSTPPNSKPSSCSDSLSLKSIIPDHPGVKEQDMKNPDSLVSKSDPTDDTKYNPPTAKEGTPAKETLDVKSSRQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDQVSPRETAIWLAKSLKGLMIGESGGRC. 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05126 1018 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05126 1018 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 967 - -
Seca3g05126 1018 MobiDBLite consensus disorder prediction 622 636 - -
Seca3g05126 1018 MobiDBLite consensus disorder prediction 611 636 - -
Seca3g05126 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Seca3g05126 1018 FunFam Serine/threonine-protein kinase Nek5 90 335 - -
Seca3g05126 1018 MobiDBLite consensus disorder prediction 440 457 - -
Seca3g05126 1018 MobiDBLite consensus disorder prediction 292 317 - -
Seca3g05126 1018 MobiDBLite consensus disorder prediction 290 347 - -
Seca3g05126 1018 Gene3D Transferase(Phosphotransferase) domain 1 90 329 - -
Seca3g05126 1018 SUPERFAMILY Protein kinase-like (PK-like) 4 313 IPR011009 -
Seca3g05126 1018 CDD STKc_Nek 7 262 - -
Seca3g05126 1018 MobiDBLite consensus disorder prediction 884 953 - -
Seca3g05126 1018 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Seca3g05126 1018 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05126 1018 MobiDBLite consensus disorder prediction 909 928 - -
Seca3g05126 1018 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Seca3g05126 1018 MobiDBLite consensus disorder prediction 411 457 - -
Seca3g05126 1018 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05126 1018 MobiDBLite consensus disorder prediction 884 902 - -
Seca3g05126 1018 MobiDBLite consensus disorder prediction 478 509 - -
Seca3g05126 1018 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05126 Seca-Chr3 100427975 100434865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05126 14 263 MAP Kinase Kinase Kinase AT1G53570 32.157 1.98e-36 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Seca3g05126 Pkinase 5.7e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05126 K08857 - gmx:100780141 1506.89