Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05122 ATGAAGCGCCAACTTCCTTTCTCTTCCATGAGGCCTCCCTTTCCACCTAACGGAGAGTATCATCGCTTTTCCCCCGACCACCGCCCACCTCAAAACGACGCCGAAGCCATTGTCGTCAAGTTCCCTCAATTAAAGCGAAAGAATGACACTGCTGATTTTGAAGCTGATTCTGGTGATAGGATGACTCTTGCATCCACTGAAGCAGCTAATAGTCTTTTTCAGACACCTATATCAGGAAAGACAAGGAAATCAAGCAAAGCCTCTAGACTTACAAAATGCAACAGATTTGGACCAAAAACCCCAGGCTCAAACATAGGTTCTTCTTCAGGCAATAATCTCACTCCTGCTGGTCAATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCGGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGACACATTAGAGGTACAAAAGAGGAGAATATATGATATAACGAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAGCTTAAAAACAGAATTCAATGGAAGGGCCTGGATGTTTCAAGACCAGGGGAGGCTGATGTTAGTTTTGCCAGTTTACAGGCAAGGAATTATTCTAATTGCAGTTAA 633 0.4218 MKRQLPFSSMRPPFPPNGEYHRFSPDHRPPQNDAEAIVVKFPQLKRKNDTADFEADSGDRMTLASTEAANSLFQTPISGKTRKSSKASRLTKCNRFGPKTPGSNIGSSSGNNLTPAGQCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADVSFASLQARNYSNCS. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05122 210 MobiDBLite consensus disorder prediction 97 113 - -
Seca3g05122 210 SMART E2F_TDP_2 120 185 IPR003316 GO:0005667|GO:0006355
Seca3g05122 210 MobiDBLite consensus disorder prediction 1 31 - -
Seca3g05122 210 Pfam E2F/DP family winged-helix DNA-binding domain 122 185 IPR003316 GO:0005667|GO:0006355
Seca3g05122 210 Gene3D - 114 187 IPR036388 -
Seca3g05122 210 FunFam E2F transcription factor 1 114 187 - -
Seca3g05122 210 PANTHER TRANSCRIPTION FACTOR E2F 67 203 IPR015633 GO:0000978|GO:0006357
Seca3g05122 210 Coils Coil 136 156 - -
Seca3g05122 210 MobiDBLite consensus disorder prediction 78 113 - -
Seca3g05122 210 SUPERFAMILY "Winged helix" DNA-binding domain 120 183 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05122 Seca-Chr3 100317162 100320064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05122 2 202 E2F-DP Transcription Factor Family AT5G22220 60.287 2.41e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Seca3g05122 E2F_TDP 3.2e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05122 K06620 - gmx:100819817 317.39