Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05121 ATGCCTTACAACCATGTCATAAATAAGACCTTAAAGGTAATATTTTTTTATCATCTGCAGGCTGAAGTTGAAAATCTTACAATAGAGGAGCACCGTTTAGATGAACAAACAAGGGAGGTTCAAGAAAGACTAAGGGATCTTAGTGAAGATCAAAATAATCAAAAATATCTTTTTGTTACTGAGGAAGATATAAAGAGCTTGCCCTGCTTCAAGGATGAAACCCTGATAGCAATTAAAGCTCCACATTGCACCACTTTGGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATGGTCCTGAGAAGCACAATGGGCCCAATAGATGTATACCTTATTAGGTATGATTACTTTTTTTGTGGGTCTGAACTCATTTACGTCAAGTCAATGATCTTGATGCTTGGAAAATGCAATAAATTTGGCATTCTTGATCTCTTCTGTTCTCCCTGCCGTTCTAGTCAATTTGAAGAAAAGTTTGAGGAGATTAATGGTGTTGATGAGGCGCCCAATGTTTCATCCAGTCCAGAGTCTAACAAAAATCAATCAATAGTGGGCTCAGAGGATAGAGGGAAGGACCTAGAAATACAGGAACAAGATGTTCATGGGCCTAGTTTAGATTTTCCTACTTCACAGGACTCTGTGAGTGGGATCATGAAGATTGTTCCTTCAGATTTTGATAGTGATGCTGATTACTGGCTTTTATCTGATGCTGATGTTAGCATAACGGATATGTGGAGAACAGAACCCAGTGTTGAATGGAATAATCTGTATACAGTTCAAGAAGACCATTGTATGACTCACGTGAGCCCACCAGCACCTCAAACTCCTCCTTCGAACGTAAGTGAAGTGCCGGCGGCTTCTAACCCTACTGGAGGTTGA 894 0.4072 MPYNHVINKTLKVIFFYHLQAEVENLTIEEHRLDEQTREVQERLRDLSEDQNNQKYLFVTEEDIKSLPCFKDETLIAIKAPHCTTLEVPDPDEAVDYPQRRYRMVLRSTMGPIDVYLIRYDYFFCGSELIYVKSMILMLGKCNKFGILDLFCSPCRSSQFEEKFEEINGVDEAPNVSSSPESNKNQSIVGSEDRGKDLEIQEQDVHGPSLDFPTSQDSVSGIMKIVPSDFDSDADYWLLSDADVSITDMWRTEPSVEWNNLYTVQEDHCMTHVSPPAPQTPPSNVSEVPAASNPTGG. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05121 297 Coils Coil 23 53 - -
Seca3g05121 297 Gene3D - 16 121 - -
Seca3g05121 297 CDD E2F_DD 18 118 IPR032198 GO:0046983
Seca3g05121 297 SUPERFAMILY E2F-DP heterodimerization region 18 118 IPR037241 -
Seca3g05121 297 PANTHER TRANSCRIPTION FACTOR E2F 19 256 IPR015633 GO:0000978|GO:0006357
Seca3g05121 297 Pfam E2F transcription factor CC-MB domain 19 119 IPR032198 GO:0046983
Seca3g05121 297 MobiDBLite consensus disorder prediction 172 189 - -
Seca3g05121 297 MobiDBLite consensus disorder prediction 271 297 - -
Seca3g05121 297 MobiDBLite consensus disorder prediction 171 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05121 Seca-Chr3 100314597 100317019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05121 14 289 E2F-DP Transcription Factor Family AT2G36010 42.708 8.38e-66 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05121 K06620 - gmx:100819817 343.199