Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05120 ATGTCTTCCAACAAGAGAAAGCTCATAAGAGCCTTACACGGAGGAGGCTGTGGTTGCAACAAACCAAAGCCCTCTGACATATACGACCCAACCCCAAAACCAAAACCAAAACCCAAAATCTCAATTTACCAAAACACAAACCCTAACTGCCCCACTCCCTCCACCACCACCACTACCACCACTTCCGGCGACCGCATCGGCGACGAGGAAGACTTCACTTCCACCACCGTCTCCGAAACCGAAACTCATCATCAAGACCATAACAACACCACCAACAGTATACCCAAACCAAGCACAAAACTCAGTGATAGCATCGCCGTTGAGAAGGACTCGAAGGATCCACATAATGATTTCCGGAATTCGATGCTCCAAATGATATTTGAGAGAGAGATCTACACAGAACCCGATCTTCAAGAGCTTCTGGAATGCTTTCTTCAGCTGAATGCGCCGTGTCACCACCAAGTCATCATTCAAGCCTTCATTGAGATCTGTGAAGAAACATTCCCTAAGAAATTTGATGGTGGTGGTGGTTGA 534 0.47 MSSNKRKLIRALHGGGCGCNKPKPSDIYDPTPKPKPKPKISIYQNTNPNCPTPSTTTTTTTSGDRIGDEEDFTSTTVSETETHHQDHNNTTNSIPKPSTKLSDSIAVEKDSKDPHNDFRNSMLQMIFEREIYTEPDLQELLECFLQLNAPCHHQVIIQAFIEICEETFPKKFDGGGG. 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05120 177 MobiDBLite consensus disorder prediction 40 63 - -
Seca3g05120 177 MobiDBLite consensus disorder prediction 64 86 - -
Seca3g05120 177 ProSiteProfiles OVATE domain profile. 107 166 IPR006458 -
Seca3g05120 177 MobiDBLite consensus disorder prediction 1 102 - -
Seca3g05120 177 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 59 167 IPR038933 GO:0045892
Seca3g05120 177 NCBIfam uncharacterized plant-specific domain TIGR01568 105 164 IPR006458 -
Seca3g05120 177 Pfam Transcriptional repressor, ovate 111 166 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05120 Seca-Chr3 100289852 100290385 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Seca3g05120 Ovate 1.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05120 - - gmx:102670259 211.075