Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05092 ATGGAGGAGTGTTGCGCTCTCTGTGAGAGGAAGGCGGTGATGCAGTGTGATTCAGACCAGGCTAAGTTATGCTGGGAATGCGACGAGAAAGTTCACAGCGCTAATTTCTTGGTGGCGAAGCACTTGAGGGTCCTTCTATGCCGTCAATGCTTTTCTCTCACTCCGTGGAAAGGCTCTGGTCCCAGGCTCACACCCACAGTTACATTCTGTCATGGCTGCTTCGCAGCTCGACGCGCTAGGCTCCGTCAAGCGGTGCATCATCATCATCGTGATTATGTGGATGATGATGGTGAGTATAGTTCTGATGATAGTTATGATGATGATGACGATGACGATGATGATGGTGGTGATAATAATAATGATGGAGAAGACGAAGAGGAAGAGGATGAAGAAGCAGAGAATCAAGTGGTGCCAATGTCCTCTGCTTCTGCCTCGTCACCACCTAGTGCTGATGGTTTAGCATTTAAGCGGTTGCGAGATAACTCTTTTTCCATTGATTCTCAGGTAGGTGAAACAGGGTGTTCTTCATCTGAGATGGTTTCTGCAGCATTCAACAGTAGTGATGAATCAACCTCTATCAGCTTCTTCAGGCCAATAAAGGAGCGTCGGATTAATTAA 618 0.4709 MEECCALCERKAVMQCDSDQAKLCWECDEKVHSANFLVAKHLRVLLCRQCFSLTPWKGSGPRLTPTVTFCHGCFAARRARLRQAVHHHHRDYVDDDGEYSSDDSYDDDDDDDDDGGDNNNDGEDEEEEDEEAENQVVPMSSASASSPPSADGLAFKRLRDNSFSIDSQVGETGCSSSEMVSAAFNSSDESTSISFFRPIKERRIN. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05092 205 MobiDBLite consensus disorder prediction 97 134 - -
Seca3g05092 205 CDD Bbox1_BBX-like 4 46 - -
Seca3g05092 205 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 176 - -
Seca3g05092 205 MobiDBLite consensus disorder prediction 92 154 - -
Seca3g05092 205 SMART bboxneu5 1 46 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05092 Seca-Chr3 99767604 99768927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05092 1 118 C2C2-CO-like Transcription Factor Family AT4G27310 44.915 2.48e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05092 - - gmx:100818267 188.348