Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05083 ATGGTGTCTAGCATCATCATGTTACTTATCTGGTTCTTATTATTCTCCTACACTGCAAAAACTTCCACTTCACTAGACACTTTACCCGTGAGTCAATATATCCAAGATGGTGAAACTTTAGTTTCAGCAAGTGGGAATATTGAAGTGGGTTTCTTTAGCCCCGGAAATACAACACGTCGATACTTGGGTGTATGGTACAGGAATGTATCCCCTGCAATAGTTATATGGGTAGCCAACAGAGAAACACCTCTCCATAATAACTCAGGAGTTTTAATACTCAATGAAAAGGGTACTCTTCTACTTCTCAATGCCACAAACAACATTATTTGGTCATCCAATATATCAAGCAAGGGAGGGAATAATCCAATTGCTCAGATCTTGGATTCAGGAAATTTTGTAGTGAAAAATGAACAGGGTATTTTGTGGCAGAGTTTTGATTATCCCTGTGATGCGTTGATGCCAGGAATGAAGATAGGATGGAACTTGGAAACTGGTCTAGAAAGATTTCTCTCATCTTGGAAAAGTGCCGATGATCCTGCCAAGGGAGAATATACTTTGAAAATGGACCTTAGAGGATATCCTCAATTAATTGAATTCATGGGGTCTGCTATTTATATTAGAGGAGGGTCATGGAATGGCCAGGCTGTGACTGGAAATCCACGCACTGGGCAGATTTATTTGTGGACAACTCAGAAAGGCAGCAGGGAAGTCCTCTCAGTTGTGGATGAAATTCAGTGCGACAATTATGCTATTTGCGGTGCAAATTCTATATGCAGTGTTGATGGTTACCATCTAACTTGTGAATGCCTGAAAGGATATGTTCCCAAGTTTCCTCAACAATGGAATTTATCAATTTGGACCAATGGTTGTGTTCCAAGGAATGAATCTAATTGCAAAAGTAGTAACACAGATGGCCTCTGGAAATACACACAAATGAAATTTCCAGACACGTCTTCGTCATGGTTTAATAAGACCATGAGCCTTGAGGAATGTCAGAAATCATGTCTGAAAAACTGTTCATGTGTAGCATATGCAAATTTAGATATTCGTAGTGGAGGAAGTGGTTGTCTACTCTGGTTTAACAATCTGCTTGACGTGAAGAAATTCTCTCAATGGGGACAAGATCTCTATGTCAGAGTCCCTGCATCAGAACTAGATCAAGTTGCAGCAATTGACCATGGAAACAAGAAGAAAGAGATGGTAGGAATTACAGTTGGTGTGATTATTTTCGGATTAATTACATGTGCATCCATATTGATGATTAAGAATCTAGGGATTGCAAGAAAAATTTACAACAACCATTACAAAAATAAACTGAGGAAGGAAGACGTTGATCTCCCAACATTCGATTTATCAATCTTAATTAATGCTACTGAAAACTTTTCAAGTAGTCACAAACTTGGAGAAGGTGGCTTTGGACCAGTATACAAGGGCACACTAATAGATGGGCAAGAGTTAGCTGTGAAAAGGCTTTCCAAAAAGTCTAGACAAGGGTTTGAGGAGTTTAAAAATGAAGTAGCATTGATTGCCAAACTTCAACATCATGAATCCAAAAAGATTATGCTTGATTGGCTTAAGCGTTTCAACATTATCAATAACATTGCCCAGGGACTTCTTTATCTTCATCGAGACTCTAGGTTGAGAGTTATTCATAGAGACCTAAAAACCAGCAATATTTTACTAGATGCAAATTTGGATCCAAAAATATCAGACTTTGGCTTGGCTCGAATAGTTTTGGGAGATGAGGTTGAGGCAAACACAAATAGAGTGGCTGGAACATATGGTTACATGCCCCCTGAGTATGCTATGGGAGGGCGTTTCTCGGTAAAATCAGATGTCTTTAGCTATGGTGTGATAGTACTAGAGATTGTAAGTGGGAGAAAGAACACAACATTTTTAGACCCAGAACACAACCATAATCTACTTGGACATGCATGGAGATTATGGACTGAAGAAAGGGCACTAGAATTATTGGATGATGTATTAAGGAAACAATGCACACCTTTTGAGGTCATAAGATGCATACAAGTTGGCCTATTATGCGTCCAACAAAGACCTGAAGATAGGCCACATATGTCATCAGTGGTTCTAATGCTAAATGGTGAGAAATTATTGCCAAAGCCAAAGGTTCCAGGCTTTTACATTGAAAATAATATTACATCTGAAGCAGACCACAAACTATGCTCAGCTAATGAATTTTCCATCACAGAGTTTGATGCAAGATAA 2226 0.3877 MVSSIIMLLIWFLLFSYTAKTSTSLDTLPVSQYIQDGETLVSASGNIEVGFFSPGNTTRRYLGVWYRNVSPAIVIWVANRETPLHNNSGVLILNEKGTLLLLNATNNIIWSSNISSKGGNNPIAQILDSGNFVVKNEQGILWQSFDYPCDALMPGMKIGWNLETGLERFLSSWKSADDPAKGEYTLKMDLRGYPQLIEFMGSAIYIRGGSWNGQAVTGNPRTGQIYLWTTQKGSREVLSVVDEIQCDNYAICGANSICSVDGYHLTCECLKGYVPKFPQQWNLSIWTNGCVPRNESNCKSSNTDGLWKYTQMKFPDTSSSWFNKTMSLEECQKSCLKNCSCVAYANLDIRSGGSGCLLWFNNLLDVKKFSQWGQDLYVRVPASELDQVAAIDHGNKKKEMVGITVGVIIFGLITCASILMIKNLGIARKIYNNHYKNKLRKEDVDLPTFDLSILINATENFSSSHKLGEGGFGPVYKGTLIDGQELAVKRLSKKSRQGFEEFKNEVALIAKLQHHESKKIMLDWLKRFNIINNIAQGLLYLHRDSRLRVIHRDLKTSNILLDANLDPKISDFGLARIVLGDEVEANTNRVAGTYGYMPPEYAMGGRFSVKSDVFSYGVIVLEIVSGRKNTTFLDPEHNHNLLGHAWRLWTEERALELLDDVLRKQCTPFEVIRCIQVGLLCVQQRPEDRPHMSSVVLMLNGEKLLPKPKVPGFYIENNITSEADHKLCSANEFSITEFDAR. 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05083 741 PIRSF SRK 220 516 IPR024171 GO:0004674
Seca3g05083 741 PIRSF SRK 515 741 IPR024171 GO:0004674
Seca3g05083 741 PIRSF SRK 1 224 IPR024171 GO:0004674
Seca3g05083 741 CDD B_lectin 31 148 IPR001480 -
Seca3g05083 741 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 297 380 - -
Seca3g05083 741 ProSitePatterns Serine/Threonine protein kinases active-site signature. 549 561 IPR008271 GO:0004672|GO:0006468
Seca3g05083 741 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 145 - -
Seca3g05083 741 Pfam S-locus glycoprotein domain 224 277 IPR000858 GO:0048544
Seca3g05083 741 Gene3D Hepatocyte Growth Factor 297 377 - -
Seca3g05083 741 CDD PAN_AP_plant 296 381 - -
Seca3g05083 741 SMART blect_4 31 148 IPR001480 -
Seca3g05083 741 Gene3D Transferase(Phosphotransferase) domain 1 514 706 - -
Seca3g05083 741 Gene3D Phosphorylase Kinase; domain 1 441 513 - -
Seca3g05083 741 SUPERFAMILY Protein kinase-like (PK-like) 446 699 IPR011009 -
Seca3g05083 741 ProSiteProfiles Bulb-type lectin domain profile. 25 147 IPR001480 -
Seca3g05083 741 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 686 - -
Seca3g05083 741 Gene3D - 20 145 IPR036426 -
Seca3g05083 741 ProSiteProfiles EGF-like domain profile. 242 279 IPR000742 -
Seca3g05083 741 SMART serkin_6 461 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05083 741 SMART ntp_6 301 380 IPR003609 -
Seca3g05083 741 Pfam PAN-like domain 298 366 IPR003609 -
Seca3g05083 741 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 179 IPR036426 -
Seca3g05083 741 ProSiteProfiles PAN/Apple domain profile. 298 381 IPR003609 -
Seca3g05083 741 Pfam D-mannose binding lectin 74 174 IPR001480 -
Seca3g05083 741 ProSiteProfiles Protein kinase domain profile. 461 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05083 741 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 506 707 - -
Seca3g05083 741 Pfam Protein tyrosine and serine/threonine kinase 522 697 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05083 Seca-Chr3 99680295 99686035 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05083 449 716 Receptor kinase-like Gene Family AT4G23140 50.325 3.52e-100 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05083 PK_Tyr_Ser-Thr 6.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05083 - - gmx:100814745 1025