Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05080 ATGACAAAAACTTCCATTTCACTAGACACTTTATCGGTGAATGAATCTATCCAAGATGGAGAGACTTTAGTTTCAGCAAGTGGAATTACTGAAGTGGGTTTCTTCAGCCCCGGAAACTCAACACGTCGATACTTGGCTGTATGGTTCAGGAATGTATCCCCAACAACAGTGATATGGGTGGCCAACCGAGAAACACCTCTCCAGAACAACTCAGGAGTTTTAAAACTCAATGAAGAAGGGATTCTTCAACTTCTCAATGGCACAAACAGCATTATTTGGTCATCCAATATATCAAGCAAGGCAGGGAGTAATCCAATTGCTCAGATCTTCGATTCAGGAAACTTTGTAGTGAAAAATGGACAGGAAACTAACAAGGACAACTTTTTGTGGCAGAGTTTTGATTATCCTTGCGATACATTGTTGCCAGGAATGAAGCTTGGAAACTGGGGAGCTGATATACATGTTAGAGCAGGGTCATGGAATGGCCAGGCTATGACTGAATATCCACTTCCAACTCCTGGAGTTTCACAAACATTTGTGTTCAATGTAAAAGAAGTGTATTATGAGTTTGAGATTCTTTATAAATCGACTTTCAGCACATATACACTTACCGTACCAGGTGCCGGGCAAAGTTATTTCTGGACAACTGAACAAGACATCAGGGAAGCCACCTCAATTGTGGAGGAGGATCAGTGTGAAAATTATGCCACTTGTGGTTCAAATTCTGTATGCCATATTGATGGGAACCATCTAACTTGTGAATGCCTGAAAGGATATGTTCCCAAGTTTATTGAACAATGGAATGTATCAGTTTGGTCTAACGGTTGTGTTCCAAGGAATAAATCTACTTGCGGAAACAGATACACAGATGGCTTCTTGAAGTACAGAGGAATGAAATTGCCAGACACGTCTTCCTCATGGTTTAATAAGACCATGAACCTTGAGGAATATTCAAACATGACAATTGCATTTGGCAGACATGAAAATAGGAAGAGTAGTCTACTTCTAACGGTCATACCGATCTCATTATTTCTAATACTGCTTATACCTGGTCTATTCGTTTACTGGACTAGAAAGCAGAGGAAAGGGGAAGATTTGCTACATTTTGATGTAGGCATGAGCATGAAAGTTAAAGACACAGAGTTTACTGAAATAGATAAGGTTTCAAAAGTTAAGAAGAAGGAAGTTAAATTGCCACTATTCAGTTTTGGGAGCGTTTCAGCTGCAACTAATAACTTTTCAGATGCAAATAAACTTGGTGAAGGTGGCTTTGGACCTGTTTACAAGGGTAAATTATTGAATGGGGATGAGGTTGCTGTAAAAAGACTATCCCGGAGATCTGGTCAAGGATGGGAGGAGTTGAGAAATGAAGCCTTGTTGATTGCAAAACTCCAACATAATAATCTTGTTAGACTTTTAGAAGGCATTTTCTCAATAAAATCTGACGTGTTTAGCTTTGGGGTTCTGTTGTTAGAGATTTTGAGTGGCAAGAAGAATACCGGTTTTTATCAAATAAACTCCCTCAATCTCCTTGCTTATGCTTGGGATCTATGGACAAGTAATTCGGCAATGGACCTTATAGATTCAACACTGGAAGATATCTCCAATAAGCATGTAGTGCCAAGATATGTGAACATAGGACTTCTTTGTGTCCAAGATAGTCCAACAGATAGGCCAACCATGTCTGATGTTGTATCAATGATTGGCAATGACACTGCGGCCCTTCCTTGTCCAATGCCACCTGCATTTCTAAATGTGCGAGGTAATGAGAATTCAAGATTGGCTAGAAGCGAAGAAGAAAACTTTTCTGTGAATGTTATCACAGATTCACTTGTGGAACCAAGATGA 1848 0.3972 MTKTSISLDTLSVNESIQDGETLVSASGITEVGFFSPGNSTRRYLAVWFRNVSPTTVIWVANRETPLQNNSGVLKLNEEGILQLLNGTNSIIWSSNISSKAGSNPIAQIFDSGNFVVKNGQETNKDNFLWQSFDYPCDTLLPGMKLGNWGADIHVRAGSWNGQAMTEYPLPTPGVSQTFVFNVKEVYYEFEILYKSTFSTYTLTVPGAGQSYFWTTEQDIREATSIVEEDQCENYATCGSNSVCHIDGNHLTCECLKGYVPKFIEQWNVSVWSNGCVPRNKSTCGNRYTDGFLKYRGMKLPDTSSSWFNKTMNLEEYSNMTIAFGRHENRKSSLLLTVIPISLFLILLIPGLFVYWTRKQRKGEDLLHFDVGMSMKVKDTEFTEIDKVSKVKKKEVKLPLFSFGSVSAATNNFSDANKLGEGGFGPVYKGKLLNGDEVAVKRLSRRSGQGWEELRNEALLIAKLQHNNLVRLLEGIFSIKSDVFSFGVLLLEILSGKKNTGFYQINSLNLLAYAWDLWTSNSAMDLIDSTLEDISNKHVVPRYVNIGLLCVQDSPTDRPTMSDVVSMIGNDTAALPCPMPPAFLNVRGNENSRLARSEEENFSVNVITDSLVEPR. 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05080 615 SMART tyrkin_6 413 568 IPR020635 GO:0004713|GO:0006468
Seca3g05080 615 ProSiteProfiles Protein kinase domain profile. 413 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05080 615 CDD B_lectin 14 136 IPR001480 -
Seca3g05080 615 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 3 133 - -
Seca3g05080 615 Pfam Protein tyrosine and serine/threonine kinase 475 567 IPR001245 GO:0004672|GO:0006468
Seca3g05080 615 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 559 - -
Seca3g05080 615 Gene3D Transferase(Phosphotransferase) domain 1 472 574 - -
Seca3g05080 615 Pfam D-mannose binding lectin 56 148 IPR001480 -
Seca3g05080 615 FunFam Uncharacterized protein 388 484 - -
Seca3g05080 615 Gene3D - 4 133 IPR036426 -
Seca3g05080 615 SUPERFAMILY Protein kinase-like (PK-like) 403 566 IPR011009 -
Seca3g05080 615 ProSiteProfiles Bulb-type lectin domain profile. 8 130 IPR001480 -
Seca3g05080 615 Pfam Protein kinase domain 414 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05080 615 Gene3D Transferase(Phosphotransferase) domain 1 400 471 - -
Seca3g05080 615 SMART blect_4 14 136 IPR001480 -
Seca3g05080 615 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 160 IPR036426 -
Seca3g05080 615 Pfam S-locus glycoprotein domain 156 263 IPR000858 GO:0048544
Seca3g05080 615 ProSiteProfiles EGF-like domain profile. 228 265 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05080 Seca-Chr3 99579542 99588791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05080 452 584 Receptor kinase-like Gene Family AT4G23250 43.704 3.30e-30 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05080 S_locus_glycop 3.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05080 - - gmx:100776576 506.138