Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05076 ATGGCAGTGGCTTCATCTACCCTTTCTCCCTTGCCAATATTATTGTATTGGCTAAGCTTATTTTGTGTGAATGCAACTACCATAACAGAATTCCTACTAATGGGGCAATCACTAGGAATCTCAGACACCATGGTTTCTGCCAGTGGGAACATCGAACTGGGCTTTTTCAATAGAACCAGAGAGAATTCCACCAAGTACTACGTAGGTATATGGTTTAAAAATGTTCCAAACGACAAGATTATGTGGGTTGCTAACAGAGATTACGCATTTGAAACCTCCTCAGCCTTTCTCACCATTCAACCTGATGGAAACATTGTCATCATAGATGGACCACTGACTTACAGCGTGAGCAGTGTTCCAAACAACTCTAACACCTGCGCTTTGCTCTTGGATTCAGGAAATTTGATACTGTTGAACAACTCGAACCACTTGATTTTGTGGCAGAGTTTTGATAATCCCACGGATACACTTGTGCAGGGAATGCTGGTAGGACAGGAGTTCATTTTGAAATCATGGAAAAGTGCAGAGGACCCTGCTCCAGGAGCATTTTCACTCGTATATGATTTTCACAATGCGTGTCTAATAGTCCACAAGGGTGTTATTCATCGACTTGATTCGGATTGGAATCGGAATCGGAACAAGGACTTTATCATTTGGCCAGGTGATAGCAATTCTCGAGTGGTATTAGAAGTGTCTGGGGATCTTAACTACCAGAAATGGTCAGAGAAAGCTAAGCGTTGGGTTTCTCTACAGTCATCCAGGTGCGGAACGAACAATTCGTGTGGAGATTTTTCCATTTGTAATCCGCAACTGGAAGCTCTTGACCCTTGTCATTGTCTCGACGGTTTTGAACCATCCGGTGGATGTGTCAGGAGAAAGGAGTTGTCCTGCAGCAAAACAAATGTTGAATGGGATGATAGATTCTTACAGTTGTCTATGGTGGAGTTACCTTCAACTGAAGTTATGCTAAAGATGGATACAGCAGCGAGATGTGAACGCACTTGCTTTAATGATTGTTCTTGCGTTGCTTATGCTTATGATTTTAACAGTTATTGTTGGTTATGGCATGACCACTTGTTGGGTCTGAAGAATATCTCAGGTGATGTCGAAAATGTTAATAATACATGGTTTTATCTCAGACTTGCTGCCTCTGAAATTGCTATCATCGATTCAAACATACCGAATGCAATTGGCAGGCATGAAAACAGGAAGAGGAGTCTACTTCTATTTGTGATACCGATCTCATTTCTAATATTGCATATACTGGGCCTATATGTTTACTGGACTAAAAGGCAGAGGAAAGGGGAAGATTTGTTACATTTTGATGTAAGCATGGGCATGAAAGTGAAAGACAAAGAGTTTACTGACACAGATAAGGGTTTCAAAGTTCAAAAAAAAGAAGTCAAATTGCCATTATTCAGTTTTGGGAGCGTTTCTGCTGCAACTAATAACTTTTCAGATGCAAATAAACTTGGTGAGGGTGGCTTTGGACCTGTTTACAAGGGTAAATTATTGAATGGGGATGAGGTTGCTGTAAAAAGGCTATCCCGAAAATCTGGTCAAGGATGGGAGGAGTTGAGAAATGAAGCCTTGTTGATTGCAAAACTCCAACACAATAACCTTGTTAGACTTTTGGGCTGCTGCATTGATCGAAATGAAAAGATGTTGATTTATGAATATATGCCTAATAAAAGCTTGGATTGTTTCCTTTTTGATGCAACAAAAAGAAGGATGCTAGATTGGGAAACACGGGTTCGAATAATTGATGGCATTGCCCAAGGACTCCTTTACCTTCATCAGTATTCAAGGTTCCGGATTATTCATCGAGATTTAAAAGCTAGCAACATATTGTTAGACATCAACATGAATCCTAAAATATCAGATTTTGGAATGGCGAGAATATTTGGTGAGAATGAACTTCAAGCAAACACAAACCGAATAGTTGGAACTTATGGCTACATGTCCCCTGAATATGCTCTGGAAGGTCTTTTCTCAATAAAATCTGACGTGTTTAGCTTTGGGGTCCTTTTGTTAGAGATTGTGAGTGGCAAGAAGAATACTGGTTTTTATCAAACAAACTCCCTCAATCTCCTTGCTTATGCTTGGGATCTATGGACAAGTAATTCGGCAATGGAGCTTATGGATCCAACACTGGAAGATATCTCCAATAAACATGTAGTGCCGAGATATGTGAACATAGGACTTCTTTGTGTCCAAGATGGTCCAGCAGATAGGCCAACCATGTCTGATGTTGTATCAATGATTGGCAATGACACTGCAGCCCTTCCTTGTCCAATGCCACCTGCATTTCTAAATGTGAGAGGTAATGAGAAATCAAGATTGGCAAGAAGAACAGAAGAAAACCTTTCTGTTAATGTTATCACAGATACACTTGTGGAACCAAGATGA 2409 0.4035 MAVASSTLSPLPILLYWLSLFCVNATTITEFLLMGQSLGISDTMVSASGNIELGFFNRTRENSTKYYVGIWFKNVPNDKIMWVANRDYAFETSSAFLTIQPDGNIVIIDGPLTYSVSSVPNNSNTCALLLDSGNLILLNNSNHLILWQSFDNPTDTLVQGMLVGQEFILKSWKSAEDPAPGAFSLVYDFHNACLIVHKGVIHRLDSDWNRNRNKDFIIWPGDSNSRVVLEVSGDLNYQKWSEKAKRWVSLQSSRCGTNNSCGDFSICNPQLEALDPCHCLDGFEPSGGCVRRKELSCSKTNVEWDDRFLQLSMVELPSTEVMLKMDTAARCERTCFNDCSCVAYAYDFNSYCWLWHDHLLGLKNISGDVENVNNTWFYLRLAASEIAIIDSNIPNAIGRHENRKRSLLLFVIPISFLILHILGLYVYWTKRQRKGEDLLHFDVSMGMKVKDKEFTDTDKGFKVQKKEVKLPLFSFGSVSAATNNFSDANKLGEGGFGPVYKGKLLNGDEVAVKRLSRKSGQGWEELRNEALLIAKLQHNNLVRLLGCCIDRNEKMLIYEYMPNKSLDCFLFDATKRRMLDWETRVRIIDGIAQGLLYLHQYSRFRIIHRDLKASNILLDINMNPKISDFGMARIFGENELQANTNRIVGTYGYMSPEYALEGLFSIKSDVFSFGVLLLEIVSGKKNTGFYQTNSLNLLAYAWDLWTSNSAMELMDPTLEDISNKHVVPRYVNIGLLCVQDGPADRPTMSDVVSMIGNDTAALPCPMPPAFLNVRGNEKSRLARRTEENLSVNVITDTLVEPR. 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05076 802 ProSiteProfiles Protein kinase domain profile. 485 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05076 802 CDD STKc_IRAK 491 755 - -
Seca3g05076 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 606 618 IPR008271 GO:0004672|GO:0006468
Seca3g05076 802 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 561 763 - -
Seca3g05076 802 ProSiteProfiles Bulb-type lectin domain profile. 29 150 IPR001480 -
Seca3g05076 802 SMART blect_4 29 153 IPR001480 -
Seca3g05076 802 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 176 IPR036426 -
Seca3g05076 802 SMART serkin_6 485 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05076 802 Pfam PAN-like domain 305 360 IPR003609 -
Seca3g05076 802 SUPERFAMILY Protein kinase-like (PK-like) 470 775 IPR011009 -
Seca3g05076 802 Gene3D Phosphorylase Kinase; domain 1 459 560 - -
Seca3g05076 802 SMART ntp_6 303 375 IPR003609 -
Seca3g05076 802 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 124 776 - -
Seca3g05076 802 ProSiteProfiles PAN/Apple domain profile. 297 382 IPR003609 -
Seca3g05076 802 CDD B_lectin 36 153 IPR001480 -
Seca3g05076 802 CDD PAN_AP_plant 295 382 - -
Seca3g05076 802 FunFam Uncharacterized protein 461 560 - -
Seca3g05076 802 Pfam S-locus glycoprotein domain 222 286 IPR000858 GO:0048544
Seca3g05076 802 Pfam D-mannose binding lectin 80 166 IPR001480 -
Seca3g05076 802 Gene3D - 24 150 IPR036426 -
Seca3g05076 802 Gene3D Transferase(Phosphotransferase) domain 1 561 761 - -
Seca3g05076 802 Pfam Protein tyrosine and serine/threonine kinase 489 754 IPR001245 GO:0004672|GO:0006468
Seca3g05076 802 PIRSF SRK 2 218 IPR024171 GO:0004674
Seca3g05076 802 PIRSF SRK 206 802 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05076 Seca-Chr3 99456096 99459650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05076 462 771 Receptor kinase-like Gene Family AT4G23250 59.494 2.66e-125 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05076 PK_Tyr_Ser-Thr 6.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05076 - - gmx:100811148 1051.58