Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05070 ATGCTAGATTGGGAAACACGAGTTCGAATAATTGATGGCATTGCCCAAGGACTCCTTTATCTTCATCAGTATTCAAGGTTCCGGATCATTCATCGAGATTTAAAAGCTAGCAACATATTGTTAGACATCAACATGAATCCTAAAATATCAGATTTTGGAATGGCGAGAATATTTGGCGAGAATGAACTTCAAGCAAACACAAATCGGATAGTTGGAACTTATGGCTATATGTCTCCTGAATATGCTCTACAAGGCCTTTTCTCAATAAAATCTGACGTGTTTAGCTTTGGGGTCCTTTTGTTAGAGATTGTGAGTGGCAAGAAGAATACCGGATTTTATCAAACAAACTCCCTCAATCTTCTTGCTTATACTTGGGATTTATGGACAAGTAATTCGACAATGGACCTTATCGATCCAGCACTGGAAGATATCCCCAATAAGCATGTAGTGCCGAGATATGTGAACATAGGACTTCTCTGTGTCCAAGATCGTTCAGCAGATAGGCCAACCATGTCTGATGTTGTATCAATGATTGGCAATGACACTACGACCCTTCCTTGCCCAATGCCACCTGCATTTCTAAATGTGAGGGGTAATGAGAATTTAAGATTGGCCAGAAGAACAGAAGAAAACCTTTCTGTGAATGTTATCACAGATTCATTTGTTGAACCAAGATGA 678 0.3953 MLDWETRVRIIDGIAQGLLYLHQYSRFRIIHRDLKASNILLDINMNPKISDFGMARIFGENELQANTNRIVGTYGYMSPEYALQGLFSIKSDVFSFGVLLLEIVSGKKNTGFYQTNSLNLLAYTWDLWTSNSTMDLIDPALEDIPNKHVVPRYVNIGLLCVQDRSADRPTMSDVVSMIGNDTTTLPCPMPPAFLNVRGNENLRLARRTEENLSVNVITDSFVEPR. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05070 225 Gene3D Transferase(Phosphotransferase) domain 1 1 184 - -
Seca3g05070 225 SUPERFAMILY Protein kinase-like (PK-like) 2 201 IPR011009 -
Seca3g05070 225 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 199 - -
Seca3g05070 225 ProSitePatterns Serine/Threonine protein kinases active-site signature. 29 41 IPR008271 GO:0004672|GO:0006468
Seca3g05070 225 ProSiteProfiles Protein kinase domain profile. 1 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05070 225 SMART serkin_6 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05070 225 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 186 - -
Seca3g05070 225 Pfam Protein tyrosine and serine/threonine kinase 3 177 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05070 Seca-Chr3 99407149 99408358 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05070 2 194 Receptor kinase-like Gene Family AT4G23250 60.000 1.51e-78 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05070 PK_Tyr_Ser-Thr 9.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05070 - - mtr:11407439 381.333