Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05069 ATGTTAGCAATCTCCTCTCTATTATTTTTCTTCATGAGAACCACCATTTCACTAGACAGTATAGTTCCAGGTCAATCCATCCGATATAATGAGACATTAGTTTCAGGCTCAGCAAATTTTGAACTGGGGTTTTTCAGCCCTGGAGCTTCTAGTAATCTATATGTTGGAATATGGTACAAGGATTCTCCTTCAACAGTGGTATGGGTGGCCAATAGAGAAGCACCACTCAACAATACCTCTGGAGTTTTACAAATCAATGATCAAGGATTTCTTGTCCTTCTTAATAGCACAAAGAGCACTGTATGGTCATCCAACACATCAGGCAAGGCAGAGAATCCAATTGCACAGCTCTTGGACTCAGGAAACCTAGTTGTCAGAAATGTACATAGCAATAACCTGGGAAATATATTATGGCAGAGTTTTGATTATCCATGTGATACATTATTACCTGAAATGAAGCTAGGATGGAACTTAGAAACTGGTTTAGATAGGTTTTTGTCATCTTGGAAAACTGCTGATGATCCTGGTCAGGGTAACAATATAGTTAGAATGGACATTCAAGGCTATCCACAAGCTGTTCAATTAAAAGGGAATGTTATAAAGGCAAGAACAGGACATTGGAATGGCCTTACTTTTGCAGGATATCCAACTCAAAAGCCTAATCCAATATATAGAAATGAATTTGTGTTGAATGAGAAAGAAGTATATTATGAGTATGAACTTCTGAATAGATCAGTTTTCTCAAGATATGTCATCTCCACTTCAGGTGTTGGGCAGCGTTTTGTATGGACAAGTCAAACAAGTAGCTGGGAGGTAATCTCAACTGCCATAGCAGATCAGTGTGAAAATTATGCTCTGTGTGGTGGTTTTTCCATCTGCAACATCACTAGCACTCCTGTCTGTGGATGCCTGAAAGGGTTTGTACCAAAACATCCAGAAGAATGGAATATGTCATATTGGTCTAATGGCTGCATTCGCAGCATTCCATTTGATTGTAATAATAACGATGGCTTCATGAAGTACACGGGTATGAAGGTTCCAGACACATCTTCTTCATGGTATAGCAAGACCATGGACCTTATGGAATGCCAGAAATCTTGTCTCCAAAACTGTTCATGTACAGCATATGCAAATTTGGATATATGGGATGGAGGAAGTGGCTGCTTACTTTGGTTTCATGATCTGATTGACATGAGGGTATTCTCTCAAGGAGGACAAGATCTTTATATACGAGTTCCTGCTTCAGAGATAGGTACAAACCATGACCATAGGAAGTTCACCAAGAAGAAGCTAGTAGGAATAGTAGTTGGGTCCACAGCATTAGTCATCGGCTTGATAATTCTTGGTTTGGCAGAAAGAATGTTTTACTGGAAGCAATACAAAAGTAAACAAAGGAAGGAAGACATGGATCTGCCAACATTTGATTTGCCAATCATTGCTAAAGCCACTAATAACTTTGCAAGCATAAATAAACTAGGGGAAGGTGGATTTGGACCTGTGTATAAGGGTACATTGATGGATGGGCAGGAAGTAGCCATTAAAAGACACTCAAAGAAGTCTGATCAAGGATTGGAGGAGTTTAAAAATGAGGTTGCGCTGATTGCCAAACTTCAGCACCGTAATCTTGTGAAGCTTCTTGGTTGCTGCATCCAGGGAGAGGAGAAAATGTTGATCTATGAATACATGTCCAACAAGAGCTTGGACTACTTCATCTTTGATGAACCTAGAAGCAAGCAATTGGATTGGCTTCAGCGTTTCCGCATTATTTGTGGTGTTGCTAGAGGGCTTCTCTATCTTCACCAAGACTCTAGGCTGAGAATTATTCACAGAGATTTGAAAACCAGCAATATCCTACTAGATGCTTATATGAATCCAAAAATTTCAGACTTTGGCCTAGCTCGGACCTTTTGGGGAGATCAAATTGAAGCCAACACAAAAAAAGTGGTTGGAACATATGGTTACATACCACCAGAGTATGCTGTGCATGGTCATTACTCAGTAAAGTCTGATATCTTTAGTTTTGGAGTAATAGTACTGGAGATAATCAGTGGGAAGAAGAATAGGGGATTTTCTGACCCAGAAAAATGGCTTAATCTTCTTGGACATGCATGGAGACTCTGGACTGAAGATAGACCACTAGAACTGATGAATAAACACTTAGGTGAAAGCTTCAAGTCTTCTGAAGTCATACGATGCATACATGTGGGTTTGTTATGTGTACAACAAAAACCAGAAGACAGACCAGACATATCTTCTGTTGTTCTTATGCTAAATGGTGAGAAATTATTGCCCCAGCCAAAGGCACCAGGATTTTATACAGGAAGTGATTTACCTGAAGCAGAATCTTCTAGAATACACAATCTGTTCACCCCAAATGAGATGTCCCTTTCAACTCTTGAAGCAATCTCCTACACTACGAGAACTTCCACTTCACTAGACACTTTAGCAGTGAGTGAATCTATACGAGATGGTGAGTCTTTAGTTTCAGCAGGTGGAGTTATTGAAGCGGGTTTCTTTAGCCCAGGAAATTCAACACGTCGATACTTGGGTTCATGGTACAGGAATGTAACCCCTTTAACAGTGTTATGGATAGCCAACCGAGAAAAACCTCTACTGAATAATTTAGGAGTTTTAAAACTCAATGAAAAGGGGATTCTTCTCCTTCTCAATGGCACAAACAGCACTATTTGGTCATCCAATGCATCAAGCAAAGCAGGGAACAATCTAATCGCTAAGCTCTTTGATTCAGGAAATTTTGTAGTGAAAAATGGACAGGAAAGTGACAAGGACAGTTTTCTGTGGCAGAGTTTTGATTATCCATGTGACACGTTTGCACCTGGAATGAAGCTTGGATGGAACTTAGAAACTGGGATAGAAAGTTTTGTATCATCTTGGAAAAGTGCTGATGATCCTGCTATGGGGGGATTTTCTTCAAGACTTGACATTAGAGGATATCCACAAGTTATTACATTCAAGGGACCTAATAAGAAAATTAGAACAGGGCCATGGAATGGCCAGTCTTTGGTTGGATATCCAGTTTCAACTCCTAAAATATCACAAAAATTTGTGTTAAATGAAAAAGAAGTGTATTATGAGTACAAGATTCTTGATAGTTCGGTTTTCATTGTATATACACTGACCCCTTCAGGCATTGCAGAGAGTCTGTTTTGGACAAGTGAATCAGGCAACAGGGAAGTCTTCTCAACAGGAGAGGAAGATCAATGTGAGCATTATGCCTTTTGCGGTGCAAATTCTGTTTGTAGTGTTGATGGTTACCATGCAACCTGTGAATGTTTGAAAGGATATGTTCCCAAGTTTCCTGAAATATGGAATATATCATTTTCAAACGGTTGTGTTTCGAGGAATAAATCTAACTGCAGCGGAAACAGTTACACGGATGGATTCTTGAAGTATACACACATAAAATTGCCAGACACTGTTTCATCATGGTTCAATGAGACCATGAACCTTGAGGAATGTCATAAGTCATGCCTGAAAAACTGTTCTTGTGTAGCATATGCAAACTTAGATATCAGTAATGGTGGAAGTGGTTGTCTACTTTGGTTTAATAATCTGGTTGACTTGAGGAAATTCTCTAGGTGGGGACAAGATCTTTATGTCAGAGTCCCTGCTTCAGAACTAGGTACACAATTTATTCTATTTTGTTTTATATTTTTTTGGTTACTTTATTCTTTAGCCTTTATTTTCTTATACTGGGTTGACTATATTTCATCATTCTAA 3741 0.3911 MLAISSLLFFFMRTTISLDSIVPGQSIRYNETLVSGSANFELGFFSPGASSNLYVGIWYKDSPSTVVWVANREAPLNNTSGVLQINDQGFLVLLNSTKSTVWSSNTSGKAENPIAQLLDSGNLVVRNVHSNNLGNILWQSFDYPCDTLLPEMKLGWNLETGLDRFLSSWKTADDPGQGNNIVRMDIQGYPQAVQLKGNVIKARTGHWNGLTFAGYPTQKPNPIYRNEFVLNEKEVYYEYELLNRSVFSRYVISTSGVGQRFVWTSQTSSWEVISTAIADQCENYALCGGFSICNITSTPVCGCLKGFVPKHPEEWNMSYWSNGCIRSIPFDCNNNDGFMKYTGMKVPDTSSSWYSKTMDLMECQKSCLQNCSCTAYANLDIWDGGSGCLLWFHDLIDMRVFSQGGQDLYIRVPASEIGTNHDHRKFTKKKLVGIVVGSTALVIGLIILGLAERMFYWKQYKSKQRKEDMDLPTFDLPIIAKATNNFASINKLGEGGFGPVYKGTLMDGQEVAIKRHSKKSDQGLEEFKNEVALIAKLQHRNLVKLLGCCIQGEEKMLIYEYMSNKSLDYFIFDEPRSKQLDWLQRFRIICGVARGLLYLHQDSRLRIIHRDLKTSNILLDAYMNPKISDFGLARTFWGDQIEANTKKVVGTYGYIPPEYAVHGHYSVKSDIFSFGVIVLEIISGKKNRGFSDPEKWLNLLGHAWRLWTEDRPLELMNKHLGESFKSSEVIRCIHVGLLCVQQKPEDRPDISSVVLMLNGEKLLPQPKAPGFYTGSDLPEAESSRIHNLFTPNEMSLSTLEAISYTTRTSTSLDTLAVSESIRDGESLVSAGGVIEAGFFSPGNSTRRYLGSWYRNVTPLTVLWIANREKPLLNNLGVLKLNEKGILLLLNGTNSTIWSSNASSKAGNNLIAKLFDSGNFVVKNGQESDKDSFLWQSFDYPCDTFAPGMKLGWNLETGIESFVSSWKSADDPAMGGFSSRLDIRGYPQVITFKGPNKKIRTGPWNGQSLVGYPVSTPKISQKFVLNEKEVYYEYKILDSSVFIVYTLTPSGIAESLFWTSESGNREVFSTGEEDQCEHYAFCGANSVCSVDGYHATCECLKGYVPKFPEIWNISFSNGCVSRNKSNCSGNSYTDGFLKYTHIKLPDTVSSWFNETMNLEECHKSCLKNCSCVAYANLDISNGGSGCLLWFNNLVDLRKFSRWGQDLYVRVPASELGTQFILFCFIFFWLLYSLAFIFLYWVDYISSF. 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05069 1246 SUPERFAMILY alpha-D-mannose-specific plant lectins 861 971 IPR036426 -
Seca3g05069 1246 SMART ntp_6 333 412 IPR003609 -
Seca3g05069 1246 SMART ntp_6 1130 1209 IPR003609 -
Seca3g05069 1246 Pfam Domain of unknown function (DUF3403) 763 801 IPR021820 GO:0004674
Seca3g05069 1246 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1125 1209 - -
Seca3g05069 1246 Gene3D Phosphorylase Kinase; domain 1 459 561 - -
Seca3g05069 1246 ProSiteProfiles PAN/Apple domain profile. 332 413 IPR003609 -
Seca3g05069 1246 Pfam Protein tyrosine and serine/threonine kinase 489 754 IPR001245 GO:0004672|GO:0006468
Seca3g05069 1246 ProSiteProfiles Bulb-type lectin domain profile. 18 138 IPR001480 -
Seca3g05069 1246 Pfam PAN-like domain 332 398 IPR003609 -
Seca3g05069 1246 Pfam PAN-like domain 1126 1195 IPR003609 -
Seca3g05069 1246 ProSiteProfiles PAN/Apple domain profile. 1126 1210 IPR003609 -
Seca3g05069 1246 ProSiteProfiles Protein kinase domain profile. 486 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05069 1246 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 331 412 - -
Seca3g05069 1246 CDD STKc_IRAK 492 759 - -
Seca3g05069 1246 CDD B_lectin 30 144 IPR001480 -
Seca3g05069 1246 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 807 937 - -
Seca3g05069 1246 Gene3D Transferase(Phosphotransferase) domain 1 562 764 - -
Seca3g05069 1246 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 747 - -
Seca3g05069 1246 CDD PAN_AP_plant 333 413 - -
Seca3g05069 1246 ProSiteProfiles Bulb-type lectin domain profile. 812 934 IPR001480 -
Seca3g05069 1246 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 175 IPR036426 -
Seca3g05069 1246 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 562 765 - -
Seca3g05069 1246 Gene3D - 807 937 IPR036426 -
Seca3g05069 1246 Gene3D - 14 141 IPR036426 -
Seca3g05069 1246 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 13 141 - -
Seca3g05069 1246 Pfam S-locus glycoprotein domain 999 1106 IPR000858 GO:0048544
Seca3g05069 1246 Pfam S-locus glycoprotein domain 203 310 IPR000858 GO:0048544
Seca3g05069 1246 CDD PAN_AP_plant 1123 1210 - -
Seca3g05069 1246 SMART serkin_6 486 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05069 1246 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Seca3g05069 1246 SMART blect_4 818 940 IPR001480 -
Seca3g05069 1246 SMART blect_4 24 144 IPR001480 -
Seca3g05069 1246 CDD B_lectin 818 940 IPR001480 -
Seca3g05069 1246 SUPERFAMILY Protein kinase-like (PK-like) 471 757 IPR011009 -
Seca3g05069 1246 ProSiteProfiles EGF-like domain profile. 1071 1108 IPR000742 -
Seca3g05069 1246 Pfam D-mannose binding lectin 860 966 IPR001480 -
Seca3g05069 1246 Pfam D-mannose binding lectin 65 170 IPR001480 -
Seca3g05069 1246 Gene3D Hepatocyte Growth Factor 329 409 - -
Seca3g05069 1246 Gene3D Hepatocyte Growth Factor 1128 1206 - -
Seca3g05069 1246 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 451 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05069 Seca-Chr3 99303779 99310981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05069 419 775 Receptor kinase-like Gene Family AT4G23190 53.134 4.10e-127 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05069 PK_Tyr_Ser-Thr 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05069 - - aprc:113865090 1474.91