Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05064 ATGGGTGGAAATATTGCCGTATGTGAATGCCTGAAAGGATATGTTCCCAAGTTTCCTGAAGAGTGGAATATATCATATTGGTCTAATGGTTGTGTTCCAAGGAATAAATCCAATTGTGCAAACAACACAGATGGCTTTTTGATGTACACTAACATGAAATTGCCAGACACATCTTCATCATGGTTTAGTAAGACCATGAACCTTGTGGAATGCAAGAAGTCATGTCTGAAAAATTGTTCATGTACAGCTTATGCAAATTTGGATATCCGCAGTGGAGGAAGTGGTTGTCTTCTTTGGTTTGATGAATTGGTTGACATGAGGAGCTTCTCTGAATGGGGGCAAGACCTTTATATTAGAGTCCCTGCTTCTGAACTAGATCATTTGGCAGCTAATGGCAATAACAACAAGAAGAAGCTTGTAGGGATTACAGTTGGTGTGGTTTGTTTTGGATTGGTTATATGTCTCTGCATACTACTGTTTTGTTTCAACCAATTAGGTGTAGCAAGAATAATTTACAAAAAGCATTATGAGAATATACTGAAGAACGAAGACATAGATTTGCAAACATTTGATTTTCCAATCATTGCTAAAGCTACCGGAAACTTTTCATGCACTAACAAACTGGGTGAAGGTGGCTTTGGACCTGTATACAAGGGAACACTAGAAAATGGACAAGAATTAGCTGTGAAAAAGCTTTCAGAGAAGTCTAGACAAGGGTTGGAGGAGTTCAAAAATGAAATGGCCTTAATTGCCAAACTTCAGCATCGTAACCTTGTTAAGCTTCATGGTTATTGCATTCAAGGAGAAGAAATCATGTTGATATATGAATACATGCCCAACAAAAGCTTGGACTATTTTATTTTTGATGAAACTAGTCGGAGGATACTAGACTGGCACAAGCGTTTCAACATCATTTGTGGCATTGCTCGAGGACTTCTTTATCTTCATCAAGACTCTAGATTGAGAATTATTCATAGAGATCTAAAAGCCAGCAATATTCTACTAGATGCAAATTTGGATCCGAAAATATCAGATTTTGGCTTGGCTAGAACATTGTTAGGAGATCAAGTTGAGGCAAACACAAACAGGGTTGCTGGAACATATGGTTACATGCCTCCTGAGTATGTTGTGCGTGGGCGTTTCTCAATGAAATCGGATGTCTTTAGTTATGGGGTGATACTTCTAGAAATAGTAAGTGGGAAGAAGAACATAGAATTTTCAGATCCAGAAAACTACCACAATCTTCTTGGACATGCATGGAGACTATGGACAGAAGGGAAGACTCTAGAACTATTGGATGAAATGCTATGGGAAACATGTACACCTTCTGAGGTCACACGATGCATACAAGTTGGCCTATTATGTGTACAACAAAGACCAGAAGATAGGCCAGACATGTCGTCAATACTTTTAATGCTAAATGGTGAGAAATTATTAGCCAAGCCAAAGATTCCAGGTTTCTACCATCAAAGTGATATTACACCCGAAGCAGATGCTTTGTTGGCAAATCGCACACTATTCTTTCCAGAAGACATTCCTATCACAATATTAGAGGCAAGATAG 1563 0.3852 MGGNIAVCECLKGYVPKFPEEWNISYWSNGCVPRNKSNCANNTDGFLMYTNMKLPDTSSSWFSKTMNLVECKKSCLKNCSCTAYANLDIRSGGSGCLLWFDELVDMRSFSEWGQDLYIRVPASELDHLAANGNNNKKKLVGITVGVVCFGLVICLCILLFCFNQLGVARIIYKKHYENILKNEDIDLQTFDFPIIAKATGNFSCTNKLGEGGFGPVYKGTLENGQELAVKKLSEKSRQGLEEFKNEMALIAKLQHRNLVKLHGYCIQGEEIMLIYEYMPNKSLDYFIFDETSRRILDWHKRFNIICGIARGLLYLHQDSRLRIIHRDLKASNILLDANLDPKISDFGLARTLLGDQVEANTNRVAGTYGYMPPEYVVRGRFSMKSDVFSYGVILLEIVSGKKNIEFSDPENYHNLLGHAWRLWTEGKTLELLDEMLWETCTPSEVTRCIQVGLLCVQQRPEDRPDMSSILLMLNGEKLLAKPKIPGFYHQSDITPEADALLANRTLFFPEDIPITILEAR. 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05064 520 Pfam PAN-like domain 39 106 IPR003609 -
Seca3g05064 520 ProSiteProfiles Protein kinase domain profile. 202 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05064 520 FunFam - 278 482 - -
Seca3g05064 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 323 335 IPR008271 GO:0004672|GO:0006468
Seca3g05064 520 Pfam Protein tyrosine and serine/threonine kinase 204 470 IPR001245 GO:0004672|GO:0006468
Seca3g05064 520 Gene3D Hepatocyte Growth Factor 37 117 - -
Seca3g05064 520 Gene3D Transferase(Phosphotransferase) domain 1 278 482 - -
Seca3g05064 520 ProSiteProfiles PAN/Apple domain profile. 39 121 IPR003609 -
Seca3g05064 520 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 489 - -
Seca3g05064 520 SMART ntp_6 41 120 IPR003609 -
Seca3g05064 520 CDD STKc_IRAK 208 475 - -
Seca3g05064 520 SMART serkin_6 202 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05064 520 SUPERFAMILY Protein kinase-like (PK-like) 186 473 IPR011009 -
Seca3g05064 520 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 167 277 - -
Seca3g05064 520 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 38 120 - -
Seca3g05064 520 Gene3D Phosphorylase Kinase; domain 1 175 277 - -
Seca3g05064 520 CDD PAN_AP_plant 36 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05064 Seca-Chr3 99230811 99234923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05064 186 512 Receptor kinase-like Gene Family AT4G23140 54.925 1.07e-126 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05064 PK_Tyr_Ser-Thr 7.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05064 - - gmx:100815430 765.763