Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05062 ATGGTGGATAACATCAAGCTATTGTTAATTTGTTCGTTCTTTTTATTCTCCTACACGAGAACATGCACTTCACTAGACAGTTTAGCTGTGAATCAATCTATCCGAGATGACCAGACTTTAGTTTCAGCACATGGAACTTTTGAAGTGGGGTTCTTCAGCCCTGGAATTTCAACAAATCGATATTTGGGTATATGGTACAGAAATTTATCCCCTGTAACGGTGGTATGGGTGGCCAACCGGGAAACACCTCTCTTGAATAAGTCAGGGGTTTTAAAACTCAATGAAAAGGGGGTTCTTTTCATTCTCAATGGCACAAACAGCACTATTTGGTCATCCAACATATCAAACAAAACCGTGAATGATCCAGTAGCACAGCTCTTGGAAACAGGAAATCTTGTGGTGAGAAATGGAATGGATACTAATGAAGACAATCTTTTGTGGCAGAGTTTTGATTATCCATGTGATACATTATTACCAGGAATGAAACTTGGATGGGACTTAGTAACCGATCTAGACAGGTTTTTCTCATCTTGGAAAAGTGCAGATGATCCAGCTAAGGGAGATTATTCTGTAAATCTTGACAAAAGAGGATATCCCCAACTAGTTTTTATGAAGGGGTCTGTCATAAAATTTAGAATGGGGTCATGGAATGGCCATAGTTTTACGGGATATCCAAGTCAACAATTGAAACAGAATCAGAGATTTAAATTTGTCTTCGACTCAAAACAAGTGTATCATCAGTACGAAGACCTTGATAGCTCCATTGTCTCCATATATACACTGACCCCTTCAGGCGTTTCACAGGCTTTAGCTTGGACAAATCAAACAAGCACAAGGATTGATATCAACACTGGAGCGGAAGACCCGTGTGATAATTATGCCATGTGTGGTGCAAATTCTATATGCAATATGGATGGAAATATTGCCAGATGTGAATGCCTGAAAGGATATGTTCCCAAGTTTCGTGAAGAGTGGAATATATCATATTGGTCTAATGGTTGTGTTCCAAGGAATAAATCCAATTGTACAAACAACAACACAGATGGCTTTTTGAGGTACACTAACATGAAATTGCCAGACACATCTTCATCATGGTTTAGTAAGACCATGAACCTTGTGGAATGCAAGAAGGCATGTCTGGAAAATTGTTCATGTACAGCTTATGCAAATTTGGATATCCTCAGTGATGGAAGTGGTTGTCTGCTTTGGTTTGATGAACTGGTTGACATAAGGAGCTTCTCTGAATGGGGACAAGACCTTTATATTAGAGTCCCTGCTTCTGAACTAGATAGTGGCCACAGAAACAAGAGGAAGAAGCTCATAGGAATCATAGTTGGCGTGATTAGTTTTGGATTAATTACATGTGTCTCCATAATAATTCAAAGAAAACGAGCACCATATCAATGGCAGCAAGAATATTTTAGATTGGAGAAGGAAGACATGGATATACCAATATTTGATTTGTCAATCATTGTTAAAGCCACTAATAATTTTGCTAGCAAAAATAAACTTGGGGAAGGTGGATTTGGACCAGTCTATAAGAAAGATCTTCATTTTCTCAACAAAAGTAATTGTGTGAGTATTCTAAATGATTGTTTTCAGGGTACATTGATAGATGGGAAAGAGGTAGCCATAAAACGGCACTCAAAGATGTCTGATCAAGGATTGGAGGAGTTTAAAAATGAAGTTGTGTTGATTGCAAAACTTCAGCATCGTAATCTTGTGAAGCTCCTTGGTTGCTGCATTCAAGGAGAGGAAAAATTGTTGATCTATGAATATATGCCCAACAAAAGCTTAGACTACTTCATCTTTGATGAAAATAGAAGCAACCTCTTGGCCTGGCCTAAGCGTTTCCACATCATTGGTGGCATTGCTCGAGGACTTCTGTATCTTCACCAAGATTCTAGACTCAGAATTGTCCACAGAGATTTGAAAACCAGCAATATCCTATTGGATGCCCATATGAATCCAAAAATCTCAGACTTTGGCTTGGCTCGGACTTTTGGGGGAGATCAAGTTGAAGCCAAAACAAAAAGAATGGTTGGAACATATGGTTACATGCCTCCAGAGTATGTTGTTCATGGTCATTACTCAGTGAAATCAGATGTCTTCAGCTTTGGTGTAATAATGCTAGAGATACTCTGTGGGAAGAAGAATACTGGATTTTCAAAGCCAGAACACTGTCTTAATCTTCTTGGACATGCATGGAGACTATGGACTGAAGACAGGCCACTGGAACTGGTAGACAGACACACCCTTGAAACATGCATTCCTTATGAAGTCCTACGATGCATACATGTGGGTTTGTTGTGTGTTCAACAAAAACCAAGAGACAGGCCAGACATGTCCTCTGTCATTCTTATGCTGAATGGTGAGAAATTATTGCCTCAGCCGAAGGCTCCTGCATTTTATACTGGAAGGGGTTTACCTGATTCTGTATCCTCATCCTTAAATCAGATGTCACTTACCATTTTTGAGGCAAGATAG 2487 0.3932 MVDNIKLLLICSFFLFSYTRTCTSLDSLAVNQSIRDDQTLVSAHGTFEVGFFSPGISTNRYLGIWYRNLSPVTVVWVANRETPLLNKSGVLKLNEKGVLFILNGTNSTIWSSNISNKTVNDPVAQLLETGNLVVRNGMDTNEDNLLWQSFDYPCDTLLPGMKLGWDLVTDLDRFFSSWKSADDPAKGDYSVNLDKRGYPQLVFMKGSVIKFRMGSWNGHSFTGYPSQQLKQNQRFKFVFDSKQVYHQYEDLDSSIVSIYTLTPSGVSQALAWTNQTSTRIDINTGAEDPCDNYAMCGANSICNMDGNIARCECLKGYVPKFREEWNISYWSNGCVPRNKSNCTNNNTDGFLRYTNMKLPDTSSSWFSKTMNLVECKKACLENCSCTAYANLDILSDGSGCLLWFDELVDIRSFSEWGQDLYIRVPASELDSGHRNKRKKLIGIIVGVISFGLITCVSIIIQRKRAPYQWQQEYFRLEKEDMDIPIFDLSIIVKATNNFASKNKLGEGGFGPVYKKDLHFLNKSNCVSILNDCFQGTLIDGKEVAIKRHSKMSDQGLEEFKNEVVLIAKLQHRNLVKLLGCCIQGEEKLLIYEYMPNKSLDYFIFDENRSNLLAWPKRFHIIGGIARGLLYLHQDSRLRIVHRDLKTSNILLDAHMNPKISDFGLARTFGGDQVEAKTKRMVGTYGYMPPEYVVHGHYSVKSDVFSFGVIMLEILCGKKNTGFSKPEHCLNLLGHAWRLWTEDRPLELVDRHTLETCIPYEVLRCIHVGLLCVQQKPRDRPDMSSVILMLNGEKLLPQPKAPAFYTGRGLPDSVSSSLNQMSLTIFEAR. 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05062 828 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 777 - -
Seca3g05062 828 CDD PAN_AP_plant 339 425 - -
Seca3g05062 828 SMART ntp_6 345 424 IPR003609 -
Seca3g05062 828 CDD B_lectin 31 153 IPR001480 -
Seca3g05062 828 Pfam D-mannose binding lectin 73 179 IPR001480 -
Seca3g05062 828 Pfam Protein tyrosine and serine/threonine kinase 501 786 IPR001245 GO:0004672|GO:0006468
Seca3g05062 828 FunFam Cysteine-rich receptor-like protein kinase 11 520 593 - -
Seca3g05062 828 Gene3D Phosphorylase Kinase; domain 1 458 593 - -
Seca3g05062 828 ProSiteProfiles Bulb-type lectin domain profile. 25 147 IPR001480 -
Seca3g05062 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 150 - -
Seca3g05062 828 Pfam PAN-like domain 342 410 IPR003609 -
Seca3g05062 828 ProSiteProfiles Protein kinase domain profile. 498 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05062 828 ProSiteProfiles PAN/Apple domain profile. 342 425 IPR003609 -
Seca3g05062 828 PIRSF SRK 2 828 IPR024171 GO:0004674
Seca3g05062 828 SMART serkin_6 498 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05062 828 SUPERFAMILY Protein kinase-like (PK-like) 480 803 IPR011009 -
Seca3g05062 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 594 797 - -
Seca3g05062 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 341 424 - -
Seca3g05062 828 Gene3D Transferase(Phosphotransferase) domain 1 594 796 - -
Seca3g05062 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Seca3g05062 828 SMART blect_4 31 153 IPR001480 -
Seca3g05062 828 Gene3D Hepatocyte Growth Factor 340 421 - -
Seca3g05062 828 Gene3D - 21 150 IPR036426 -
Seca3g05062 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 184 IPR036426 -
Seca3g05062 828 CDD STKc_IRAK 504 791 - -
Seca3g05062 828 Pfam S-locus glycoprotein domain 211 321 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05062 Seca-Chr3 99196371 99199595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05062 486 803 Receptor kinase-like Gene Family AT4G23230 55.799 7.57e-120 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05062 PK_Tyr_Ser-Thr 6.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05062 - - aprc:113865090 1210.28