Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05059 ATGAGAACATGCACTTCAGTGGACAGTTTAGCTGTGAATCAATCAATCCGAGATGGCCAGACTTTAGTTTCAGCACATGGAACTTTTGAAGTGGGGTTCTTCAGCCCTGGAATTTCAACAAATCGATATTTGGGGGGTTTTGTGGTGAAAAATGGAATGGATACTAATGAAGACAATCTTTTGTGGCAGAGTTTTGATTATCCATGTGATACATCATTACCAGGAATGAAACTTGGATGGAACTTAGTAACTGGTCTAGACAGGTTTTTATCATCTTGGAAAAGTGCAGATGATCCAGCTAAGGGAGATTATTCTGCAAATATTGACAAAAGAGGATATCCCCAACTAGTTTTTATGAAAAGGTCAGCCATAAGATTTAGAATGGGGCTATGGAATGGCCTTAGTTTTACGGGATATCCAAGTCAACAAATGAAACAGAATCAAAGATATAAATTTGTCTTCAATACAAAAGAAATGTATCATGACTATGAAGTCCTTGATTCCGTTGTCTCCCTATATAAACTAACCCCTTCAGGCATTATGCAGGCTTTAGCTTGGACAAGTCAATCAAGTGAAAGGATTGATATCAACACTGGAGCGGAAGACTCGTGTGATAATTATTCCTTTTGTGGTGCAAATTCCATATGCAATATGGATGGTAACGTTCCCAGATGTGAATGCTTGAAAGGATATGTTCCTAAGTTTCCTGAACAGTGGCATGTATCATATTGGTATGGCGGTTGTGCTCCAAGGAATAAATCTGTCTGTGAAAAGAGTAACACAGATGGATTCATGCAGTATAAAGAAATGAAATTGCCAGACACGTCTTCATCATGGTATAACAAGACCATGGATCTTGTGCAATGTCAGATGAAATGTCTGAAAAATTGTTCATGTACAGCTTATGCAAATTTGGATATCCGTAATGGAGGAAGTGGCTGTTTACTATGGTTTGATGATCTGGTTGACATGAGGAGGTTCTCTCAACAGGGTCAAGAGCTTTACATCAGAGTCCCAGCTTCTGAGCTAGATAATGTTGCGGTTAATGGCCACAGAAACAAGAAGAAGATGCTGATAGCAATCACAGGTACATTGATAGATGGGAAAGAGGTAGCCATAAAACGGCACTCAAAGATGTCTGATCAAGGATTGGAGGAGTTTAAAAATGAAGTTGTGTTGATTGCAAAACTTCAGCATCGTAATCTTGTGAAGCTCCTTGGTTGCTGCATTCAAGGAGAGGAAAAACTGTTGGTCTATGAATATATGCCCAACAAGAGTTTAGACTACTTCATCTTTGATGAAAATAGAAGCAAGCTCTTGGCCTGGCCTAAGCGTTTCCACATTGTTGGTGGCATTGCTAGAGGACTTCTCTATCTTCACCAAGACTCTAGACTCAGAATTATACACAGAGATTTGAAAACCAGCAATATCCTATTGGATGCCCATATGAAACCAAAAATCGCAGACTTTGGCTTGGCTCGGACTTTTGGGGGAGATCAATTTGAAGCCAAAACAAAAAGAATGGTTGGAACATATGGTTACATGCCTCCAGAGTATGCTGTTCATGGTCATTACTCTGTGAAATCAGATGTCTTTAGCTTTGGTGTAATAGTGCTAGAGATAGTCAGTGGGAAGAAGAATAAAGGATTTTCTGAGCCAGAACACTCTCTCAATCTTCTTGGACATGCATGGAGACTCTGGACTGAAGACAGGCCACTGGAACTGTTAGACAGACACATACTTGAAACATGCATTCCTTATGAAGTTCTACGATGCATGCATGTGGGTTTGTTGTGTGTTCAGCAAAAGCCAGGAGACAGGCCGGACATGTCCTCTGTCATTCTTATGCTGAATGGTGAGAAATTATTGCCTCAGCCGAAGGCTCCTGCATTTTATACTGGAAGGGGTTTACCTGATGCAGTATCCACATCCTCAAATCAGATGTCACTTACAATTTTTGAGGCAAGATAG 1971 0.4028 MRTCTSVDSLAVNQSIRDGQTLVSAHGTFEVGFFSPGISTNRYLGGFVVKNGMDTNEDNLLWQSFDYPCDTSLPGMKLGWNLVTGLDRFLSSWKSADDPAKGDYSANIDKRGYPQLVFMKRSAIRFRMGLWNGLSFTGYPSQQMKQNQRYKFVFNTKEMYHDYEVLDSVVSLYKLTPSGIMQALAWTSQSSERIDINTGAEDSCDNYSFCGANSICNMDGNVPRCECLKGYVPKFPEQWHVSYWYGGCAPRNKSVCEKSNTDGFMQYKEMKLPDTSSSWYNKTMDLVQCQMKCLKNCSCTAYANLDIRNGGSGCLLWFDDLVDMRRFSQQGQELYIRVPASELDNVAVNGHRNKKKMLIAITGTLIDGKEVAIKRHSKMSDQGLEEFKNEVVLIAKLQHRNLVKLLGCCIQGEEKLLVYEYMPNKSLDYFIFDENRSKLLAWPKRFHIVGGIARGLLYLHQDSRLRIIHRDLKTSNILLDAHMKPKIADFGLARTFGGDQFEAKTKRMVGTYGYMPPEYAVHGHYSVKSDVFSFGVIVLEIVSGKKNKGFSEPEHSLNLLGHAWRLWTEDRPLELLDRHILETCIPYEVLRCMHVGLLCVQQKPGDRPDMSSVILMLNGEKLLPQPKAPAFYTGRGLPDAVSTSSNQMSLTIFEAR. 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05059 656 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 422 625 - -
Seca3g05059 656 Pfam D-mannose binding lectin 45 94 IPR001480 -
Seca3g05059 656 SUPERFAMILY alpha-D-mannose-specific plant lectins 45 99 IPR036426 -
Seca3g05059 656 Pfam S-locus glycoprotein domain 126 235 IPR000858 GO:0048544
Seca3g05059 656 ProSiteProfiles PAN/Apple domain profile. 256 340 IPR003609 -
Seca3g05059 656 Gene3D Phosphorylase Kinase; domain 1 341 421 - -
Seca3g05059 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Seca3g05059 656 ProSiteProfiles Protein kinase domain profile. 343 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05059 656 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 45 607 - -
Seca3g05059 656 SMART serkin_6 353 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05059 656 SUPERFAMILY Protein kinase-like (PK-like) 363 617 IPR011009 -
Seca3g05059 656 Pfam Protein tyrosine and serine/threonine kinase 369 614 IPR001245 GO:0004672|GO:0006468
Seca3g05059 656 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 255 338 - -
Seca3g05059 656 SMART ntp_6 259 338 IPR003609 -
Seca3g05059 656 Pfam PAN-like domain 256 324 IPR003609 -
Seca3g05059 656 ProSiteProfiles EGF-like domain profile. 200 237 IPR000742 -
Seca3g05059 656 Gene3D Hepatocyte Growth Factor 255 336 - -
Seca3g05059 656 FunFam Cysteine-rich receptor-like protein kinase 11 348 421 - -
Seca3g05059 656 CDD PAN_AP_plant 256 339 - -
Seca3g05059 656 Gene3D Transferase(Phosphotransferase) domain 1 422 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05059 Seca-Chr3 99156373 99159684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05059 363 631 Receptor kinase-like Gene Family AT4G23230 61.111 2.92e-115 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05059 PK_Tyr_Ser-Thr 7.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05059 - - gmx:100786000 754.977