Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05058 ATGAGAACATGCACTTCAGTAGACAGTTTAGCTGTGAATCAATCTATCCGAGATGGCCAGACTTTAGTTTCAGCACATGGAACTTTTGAAGTGGGGTTCTTCAGCCCTGGAAATTCAACAAATCGATATTTGGGTATGTGGTACAGAAATTTATCCCCTGTAACGATCGTGTGGGTGGCCAACCGGGAAACACCTCTCCAAACTAAGTCAGGGGTTTTGAAACTCAATGAAAAGGGGGTTCTTGTGATTCTCGATGGAACAAACAGCACTGTTTGGTCGTCCAACATATCAAACAAAACCGTGAATAATCCAGTTGCACAGCTCTTGGAAACGGGAAATCTTGCGGTGAAAAATGGAATGGATACTAATGAAGACAATCTTTTGTGGCAGAGTTTTGATTATCCATGTGATACATTATTACCAGGAATGAAACTTGGATGGAACTTAGTAACTGGTCTGGACAGATTTCTATCATCTTGGAAAAGTGCAGATGATCCAGCTAAGGGAGATTATTCTGTAAATATTGACAAAAGAGGATATCCGCAACTAGTTTTTCTGAAAGGGTTTGTCATAAGATTTAGAATAGGGTCATGGAATGGCCATAGTTGTACGGGATATCCAAGTCAACAGTTGAAACAGAATGAAAGATATAAATTTGTCTTCAATTCAAAAGAAGTGTATCATCAGTATGAAGTCCTTGATAGCTCCGTTGTCTCCCTATATACACTGACCCCTTCAGGCATTATGCAGGCTTTAGCTTGGACAAGTCAATCAAGCGAAAGGATTGATATCAACACTGGAGCGGAAGACTCGTGTGATAGTTATGCCACGTGTGGTGCAAATTCTATATGCAATATGGATGGTAACGTTCCCAAATGTGAATGCCTGAAAGGATATGTTCCTAAGTTTCCTAAACAGTGGAATATATCATATTGGTCCGGCGGTTGTGCCCCAAAGAGTAAATCTGTTTGTGAAAAGAGTAACACAGATGGATTCATGAAGTACAGAGAAATGAAATTGCCAGACACGTCTTCATCATGGTATAACAAGACCATGGACCTTGTGGAATGTCAGAAGACATGTCTTAAAAATTGTTCATGTACAGCTTATGCAAATTTGGATATCCGTAATGGAGGAAGTGGCTGTTTAATTTGGTTTGATGATCTGGTTGACATGAGGAAATTCTCTCGAGAGGGACAAGAGCTTTACATCAGAGTCCCTGCTTCTGAGCTAGGTACACATTTTGTTTCCATTCATTTGCTTTTCCTTTCTGATATTGGGTTGACTATATTTCACTGTTCTAACAACAACAGGGTGATAGGGGGTAAGGCCCTGAGAAATTCTCAGCAAGAATATTTTAGATTGGAGAAGGAAGACATGGATCTACTACCAATATTTGATTTGTCAATCATTGTTAAAGCCACTAATAATTTTGCTAGCAAAAATAAACTTGGGGAAGGTGGATTCGGACCAGTCTATAAGGGTACATTGATAGATGGGAAAGAGGTAGCCATAAAACGACACTCAAAGATGTCTGATCAAGGATTGGGGGAGTTTAAAAATGAAGTTGTGTTAATTGCAAAACTTCAGCACCGTAATCTTGTGAAGCTCCTTGGTTGCTGCGTTCAAGGAGAGGAAAAATTGTTGATTTATGAATATATGCCTAACAAGAGCTTGGACTACTTCATCTTTGATGAAACTAGAAGCAAGCTCTTGGCCTGGCCTCAGCGTTTCCACATTGTTGGTGGCATTGCTCGAGGGCTTCTCTATCTTCACCAAGACTCTATACTCAGAATTATACACAGAGATTTGAAAACCAGCAATATCCTATTGGATGCCCATATGAATCCAAAAATATCAGACTTTGGCTTGGCTCGGACTTTTGGGGGAGATCAAATTGTAGCCAAAACAAAAAGAATGGTTGGAACATATGGTTACATGCCTCCAGAATATGTTGTTCACGGTCATTACTCTATGAAATCAGATGTCTTTAGCTTTGGTGTAATAATGCTAGAGATACTCAGTGGGAAGAAGAATACTGGATTTTCTGAGCCAGAACACTCTCTGAATCTTCTTGGACATGCATGGAGACTTTGGGCTGAAGACAGGCCACTGGAACTGCTAGACAGACACACACTTGAAACATGCATTCCTTATGAAGTCTTACGATGCATACAAGTGGGTTTGTTGTGTGTTCAACAAAAGCCAGGAGACAGGCCGGACATGTCCTCTGTCATTCTTATGCTGAATGGTGAGAAATTATTGCCTCAGCCGAAGGCTCCTGCATTTTATACTGGAAGGGGTTTACCTGATTCAGTATCCTCATCCTCAAATCTAACCAAAAACACATACATGATATTGTTAATTTGTTCCTTCTTTTTAGTCTCATACATGAGAACGTGCACTTCACTAGACAGTTTAGCTGTGGATCAATCATTCCGTGATGGCCAGACTTTAGTTTCAGCACATGGAACTTTTGAAGTGGGGTTCTTCAGCCCAAGAAATTCAACAAATCGATATTTGGGTATGTGGTACAGGAATTTATCCCCTGTAACGGTGGTATGGGTGGCCAACCGGGAAACACCTCTCTTGACTAAGTCAGGGGTTTTAAAAATCAATGAAAAGGGGGTTCTTTTGATTCTCAATGGCACAAACAGCACTGTTTGGTCGTCCAACATATCAAACAAAACCGTGAATAATCCAGTTGCACAGCTCTTGGAAACAGGAAATCTTGTGGTGAGAAATGGAATTGATACTAATCAAGACGATCTTTTGTGGCAGAGTTTTGATTATCCATGTGATACATCATTACCAGGAATGAAACTTGGATGGAACTTAATGACTGGTCTAGACAGATTTTTATCATCTTGGAAAAGTGCAGATGATCCAGCTAAGGGAGATTATTCTGTAAATATTGACAAAAGAGGATATCCCCAACTAGTTTTTATGAAAAGGTCTGTCATAAGATTTAGAATGGGACCATGGAATGGCATTAGTTTTACAGGATATCCAAGTCAACAATTGAAACGGAATCAGAGATATAAATTTGTCTTCAACTCAAAAGAAGTGTATCATCAGTATGAAGTCCTTGATAGTTCCGTTGTCTCCCTATATACACTGACCCCTTCAGGCATTTTGCAGGCTTTAGCTTGGACAAGTCAATCAAGCGGAAGGATTGTTATCAACACTGGAGCGGAAGACTCGTGTGATAATTATTCCTTTTGTGGTGCAAATTCCATATGCAATATGGATGGTAACGTTCCCAGATGTGAATGCTTGAAAGGATATGTTCCTAAGTTTCCTGAACAGTGGAATATATCTTATTGGTCTGGCGGTTGTGCTCCAAGGAATAAATCTGTTTGTGAAAAGAGTAACACAGATGGATTCATGCAGTATAGAGAAATGAAATTGACAGACACGTCTTCATCATGGTACAACCAGACTATGGATCTTGTGCAATGTCAGAAGAAATGTCTGAAATTTTGTTCATGTACAGCTTATGCAAATTTGGATATCCATAATGGAGGAAGTGGCTGTTTAATATGGTTTGATGATCTGGTTGACATGAGGAGGTTCTCTCAACAGGGTCAAGAGCTTTACATCAGAGTCCCTGCTTCTGAGCTAGGTACACATTTTGTTTTCATTCATCTGTTTTTCCTTTCTGATATTGGGTTGACTATATATATTGTCATCTTGGTCATTTCAGTGGCGGCAAGAGTTCATCATCTTCAATCATTTCAGTGGCAGAAAAAATATTTTAGATTGGAGAAGGAAGACTTGGATCTACCAATATTTGATTTGTCAATCATTGTTAAAGCCACTAATAGTTTTGCTAGCAGAAATAAACTTGGGGAAGGTGGATTTGGACCAGTCTATAAGGGTACATTGATAGATGGGAAAGAGGTAGCCATAAAACGGCACTCAAAGATGTCTGATCAAGGATTGGAGGAGTTTAAAAATGAAGTTGTGTTGATTGCAAAACTTCAGCATCGTAATCTTGTGAATCTCCTTGGTTGCTGCATTCAAGGAGAGGAAAAATTGTTGGTCTATGAATATATGCCCAACAAGAGTTTAGACTACTTCATCTTTGATGAAAATAGAAGCAAGCTCTTGGCCTGGCCTAAGCGTTTCCACATTGTTGGTGGCATTGCTAGAGGGCTTCTCTATCTTCACCAAGACTCTAGGCTCAGAATTATACACAGAGATTTGAAAACCAGCAATATCCTATTGGATGCCCATATGAAACCAAAAATCTCAGACTTTGGCTTGGCTCGGACTTTTGGGGGAGATCAAATTGAAGCCAAAACAAAAAAAATGGTTGGAACATATGGTTACATGCCTCCAGAGTATGCTGTTCATGGTCATTACTCTGTAAAATCAGATGTCTTTAGCTTTGGTGTAATAGTGCTAGAGATAGTCAGTGGGAAGAAGAATAAAGGATTTTCCGAGCCAGAACACTCTCTTAATCTTCTTGGACATGCATGGAGACTCTGGATTGAAGACAGGCCACTGGAACTACTAGACAGACACACACTTGAAACATGCATTCTTTCTGAAGTCTTACGATGCATACATGTGGGTTTGTTGTGTGTTCAGCAAAAGCCAGGAGACAGGCCGGACATGTCCTCTGTCATTCTTATGCTGAATGGTGAGAAATTATTGCCTCAGCCGAAGGCTCCTGCATTTTATACTGGAAGGGGTTTACCTGACATAGTATCCTCATCCTCAAATCAGATGTCACTTACAATTTTTGAGGCAAGATAG 4764 0.3995 MRTCTSVDSLAVNQSIRDGQTLVSAHGTFEVGFFSPGNSTNRYLGMWYRNLSPVTIVWVANRETPLQTKSGVLKLNEKGVLVILDGTNSTVWSSNISNKTVNNPVAQLLETGNLAVKNGMDTNEDNLLWQSFDYPCDTLLPGMKLGWNLVTGLDRFLSSWKSADDPAKGDYSVNIDKRGYPQLVFLKGFVIRFRIGSWNGHSCTGYPSQQLKQNERYKFVFNSKEVYHQYEVLDSSVVSLYTLTPSGIMQALAWTSQSSERIDINTGAEDSCDSYATCGANSICNMDGNVPKCECLKGYVPKFPKQWNISYWSGGCAPKSKSVCEKSNTDGFMKYREMKLPDTSSSWYNKTMDLVECQKTCLKNCSCTAYANLDIRNGGSGCLIWFDDLVDMRKFSREGQELYIRVPASELGTHFVSIHLLFLSDIGLTIFHCSNNNRVIGGKALRNSQQEYFRLEKEDMDLLPIFDLSIIVKATNNFASKNKLGEGGFGPVYKGTLIDGKEVAIKRHSKMSDQGLGEFKNEVVLIAKLQHRNLVKLLGCCVQGEEKLLIYEYMPNKSLDYFIFDETRSKLLAWPQRFHIVGGIARGLLYLHQDSILRIIHRDLKTSNILLDAHMNPKISDFGLARTFGGDQIVAKTKRMVGTYGYMPPEYVVHGHYSMKSDVFSFGVIMLEILSGKKNTGFSEPEHSLNLLGHAWRLWAEDRPLELLDRHTLETCIPYEVLRCIQVGLLCVQQKPGDRPDMSSVILMLNGEKLLPQPKAPAFYTGRGLPDSVSSSSNLTKNTYMILLICSFFLVSYMRTCTSLDSLAVDQSFRDGQTLVSAHGTFEVGFFSPRNSTNRYLGMWYRNLSPVTVVWVANRETPLLTKSGVLKINEKGVLLILNGTNSTVWSSNISNKTVNNPVAQLLETGNLVVRNGIDTNQDDLLWQSFDYPCDTSLPGMKLGWNLMTGLDRFLSSWKSADDPAKGDYSVNIDKRGYPQLVFMKRSVIRFRMGPWNGISFTGYPSQQLKRNQRYKFVFNSKEVYHQYEVLDSSVVSLYTLTPSGILQALAWTSQSSGRIVINTGAEDSCDNYSFCGANSICNMDGNVPRCECLKGYVPKFPEQWNISYWSGGCAPRNKSVCEKSNTDGFMQYREMKLTDTSSSWYNQTMDLVQCQKKCLKFCSCTAYANLDIHNGGSGCLIWFDDLVDMRRFSQQGQELYIRVPASELGTHFVFIHLFFLSDIGLTIYIVILVISVAARVHHLQSFQWQKKYFRLEKEDLDLPIFDLSIIVKATNSFASRNKLGEGGFGPVYKGTLIDGKEVAIKRHSKMSDQGLEEFKNEVVLIAKLQHRNLVNLLGCCIQGEEKLLVYEYMPNKSLDYFIFDENRSKLLAWPKRFHIVGGIARGLLYLHQDSRLRIIHRDLKTSNILLDAHMKPKISDFGLARTFGGDQIEAKTKKMVGTYGYMPPEYAVHGHYSVKSDVFSFGVIVLEIVSGKKNKGFSEPEHSLNLLGHAWRLWIEDRPLELLDRHTLETCILSEVLRCIHVGLLCVQQKPGDRPDMSSVILMLNGEKLLPQPKAPAFYTGRGLPDIVSSSSNQMSLTIFEAR. 1588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05058 1587 CDD STKc_IRAK 484 751 - -
Seca3g05058 1587 CDD B_lectin 810 932 IPR001480 -
Seca3g05058 1587 Pfam S-locus glycoprotein domain 990 1100 IPR000858 GO:0048544
Seca3g05058 1587 Pfam S-locus glycoprotein domain 193 303 IPR000858 GO:0048544
Seca3g05058 1587 CDD PAN_AP_plant 324 407 - -
Seca3g05058 1587 SMART blect_4 13 135 IPR001480 -
Seca3g05058 1587 SMART blect_4 810 932 IPR001480 -
Seca3g05058 1587 Gene3D Phosphorylase Kinase; domain 1 440 553 - -
Seca3g05058 1587 SUPERFAMILY Protein kinase-like (PK-like) 461 764 IPR011009 -
Seca3g05058 1587 Pfam Protein tyrosine and serine/threonine kinase 1280 1494 IPR001245 GO:0004672|GO:0006468
Seca3g05058 1587 Pfam Protein tyrosine and serine/threonine kinase 481 746 IPR001245 GO:0004672|GO:0006468
Seca3g05058 1587 Pfam D-mannose binding lectin 852 958 IPR001480 -
Seca3g05058 1587 Pfam D-mannose binding lectin 55 161 IPR001480 -
Seca3g05058 1587 Gene3D Hepatocyte Growth Factor 1120 1201 - -
Seca3g05058 1587 Gene3D Hepatocyte Growth Factor 323 404 - -
Seca3g05058 1587 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 323 406 - -
Seca3g05058 1587 Gene3D Transferase(Phosphotransferase) domain 1 554 756 - -
Seca3g05058 1587 Gene3D Transferase(Phosphotransferase) domain 1 1353 1555 - -
Seca3g05058 1587 ProSiteProfiles EGF-like domain profile. 1065 1102 IPR000742 -
Seca3g05058 1587 ProSiteProfiles Protein kinase domain profile. 478 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05058 1587 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1241 1352 - -
Seca3g05058 1587 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 554 757 - -
Seca3g05058 1587 CDD STKc_IRAK 1283 1550 - -
Seca3g05058 1587 ProSiteProfiles PAN/Apple domain profile. 1121 1205 IPR003609 -
Seca3g05058 1587 ProSiteProfiles Bulb-type lectin domain profile. 7 129 IPR001480 -
Seca3g05058 1587 CDD PAN_AP_plant 1121 1204 - -
Seca3g05058 1587 FunFam Os04g0303100 protein 46 190 - -
Seca3g05058 1587 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 739 - -
Seca3g05058 1587 Pfam PAN-like domain 1121 1189 IPR003609 -
Seca3g05058 1587 Pfam PAN-like domain 324 392 IPR003609 -
Seca3g05058 1587 Gene3D Phosphorylase Kinase; domain 1 1251 1352 - -
Seca3g05058 1587 CDD B_lectin 13 135 IPR001480 -
Seca3g05058 1587 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1120 1203 - -
Seca3g05058 1587 ProSiteProfiles PAN/Apple domain profile. 324 408 IPR003609 -
Seca3g05058 1587 ProSiteProfiles Protein kinase domain profile. 1277 1554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05058 1587 SMART serkin_6 1277 1546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05058 1587 SMART serkin_6 478 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05058 1587 FunFam Os04g0303100 protein 843 989 - -
Seca3g05058 1587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 599 611 IPR008271 GO:0004672|GO:0006468
Seca3g05058 1587 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 443 553 - -
Seca3g05058 1587 Gene3D - 3 132 IPR036426 -
Seca3g05058 1587 Gene3D - 800 929 IPR036426 -
Seca3g05058 1587 SUPERFAMILY Protein kinase-like (PK-like) 1261 1548 IPR011009 -
Seca3g05058 1587 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 2 132 - -
Seca3g05058 1587 ProSiteProfiles Bulb-type lectin domain profile. 804 926 IPR001480 -
Seca3g05058 1587 SUPERFAMILY alpha-D-mannose-specific plant lectins 853 963 IPR036426 -
Seca3g05058 1587 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 799 929 - -
Seca3g05058 1587 SMART ntp_6 1124 1203 IPR003609 -
Seca3g05058 1587 SMART ntp_6 327 406 IPR003609 -
Seca3g05058 1587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1398 1410 IPR008271 GO:0004672|GO:0006468
Seca3g05058 1587 SUPERFAMILY alpha-D-mannose-specific plant lectins 56 166 IPR036426 -
Seca3g05058 1587 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1353 1556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05058 Seca-Chr3 99140048 99147968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05058 456 772 Receptor kinase-like Gene Family AT4G05200 56.308 3.90e-113 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05058 PK_Tyr_Ser-Thr 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05058 - - aprc:113865090 2140.93