Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05052 ATGTTTCTAGGTAATGATCAACAGGGTGTACTAGCAAATGGGACAGAGATTGCTGTCAAGCGGCTTTCCATGAAATCTGGACAAGGACCACAGGAGTTCAAGAATGAAGTTCTGTTGATTGCCAATCTTCAGCATCGAAATCTGGTGAAACTTCTCGGTTGTTGCATTCAGAATGATGAAAGAATCCTAATCTATGAATACATGCCTAACAGAAGTTTGGACAACTTCATTTTTGATCAAACAAGAAACAAAGTATTGGATTGGAGTACACGCTTACATATTGTAAGTGGGATTGCTCGAGGGCTTCTCTATCTCCATCAAGATTCTAGACTAAGGATCATCCACAGAGATCTAAAAACCAGTAACATTCTTCTTGATAATGATATGAACCCAAAAATATCAGACTTTGGTCTGGCCAGGGTTTTTGGTGGTGATCATGCTGAGGCCAATACAATAAGAGTAGTGGGAACATATGGTTACATGCCTCCTGAGTATGCAGTGTATGGTTCTTTTTCAGTGAAGTCTGACGTGTTTAGCTTTGGTGTTATTGTACTGGAGATGGTTAGTGGGAGGAAGAACAGAGAATTTTCTGACCCACAACATAGTCTTAACCTTCTTGGACATGCATGGAGACTGTGGAGTGAGGATAGACCATTGGAGTTGATAGATGATTCCCTTAGTGGTTCAGTTATTTTGGCTGAGGCATTAAGATGTATTCACATAGGGCTCCTGTGTGTGCAAGAGAGACCAGATGATAGGCCAGACATGTCATCTGTTGTTCTAATGTTGAATGGTGAGAAACCATTGCCTAATCCAAGGCAGCCTGGGTTTTATCCACATGAAGTTGTCTCTTCTTCAAGCAAACAAGAACTTTCTTCAACAAATGAACTTTCCATTTCATTGTTACAGGCAAGATAG 918 0.4063 MFLGNDQQGVLANGTEIAVKRLSMKSGQGPQEFKNEVLLIANLQHRNLVKLLGCCIQNDERILIYEYMPNRSLDNFIFDQTRNKVLDWSTRLHIVSGIARGLLYLHQDSRLRIIHRDLKTSNILLDNDMNPKISDFGLARVFGGDHAEANTIRVVGTYGYMPPEYAVYGSFSVKSDVFSFGVIVLEMVSGRKNREFSDPQHSLNLLGHAWRLWSEDRPLELIDDSLSGSVILAEALRCIHIGLLCVQERPDDRPDMSSVVLMLNGEKPLPNPRQPGFYPHEVVSSSSKQELSSTNELSISLLQAR. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05052 305 PIRSF ILK 234 265 - -
Seca3g05052 305 PIRSF ILK 8 212 - -
Seca3g05052 305 ProSiteProfiles Protein kinase domain profile. 1 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05052 305 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 68 271 - -
Seca3g05052 305 Gene3D Transferase(Phosphotransferase) domain 1 68 269 - -
Seca3g05052 305 Gene3D Phosphorylase Kinase; domain 1 2 67 - -
Seca3g05052 305 Pfam Protein tyrosine and serine/threonine kinase 13 260 IPR001245 GO:0004672|GO:0006468
Seca3g05052 305 CDD STKc_IRAK 9 265 - -
Seca3g05052 305 FunFam Cysteine-rich receptor-like protein kinase 11 3 67 - -
Seca3g05052 305 SMART serkin_6 2 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05052 305 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 303 - -
Seca3g05052 305 SUPERFAMILY Protein kinase-like (PK-like) 12 286 IPR011009 -
Seca3g05052 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 113 125 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05052 Seca-Chr3 98949193 98950863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05052 3 277 Receptor kinase-like Gene Family AT4G23230 59.420 3.35e-119 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05052 PK_Tyr_Ser-Thr 2.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05052 - - gmx:106794307 459.144