Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05049 ATGGAAAGCTTCAAAGTGCTATTTTTATGCTCCTTCTTGTTCAACCTTATACCCCAGTTCAACACACTGGACATCATTTCTTCAGGACAATCTATCAAAGGTAATGAGACTCTAATCTCATCAGCAGAAACTTTTGAGGCTGGATTCTTCAGCTTTGGAAATTCAAATAGCCAATACTTTGGTATATGGTATAAGGATCTTTCTCCAAGAACTGTTGTATGGGTGGCCAATAGAGATACCCCACTGGGAAACTCCTCAGGAGTTTTGCAGCTCAGTGATGGAGGAAACCTTGTTATTCTTGATGGCACAGGAGCAACCATGTGGTCCTCCAATGCATCAGCAACTGCAAAGAAGCCAATTTTGGAGCTTTTGGAGTCTGGAAACCTTGTTGTGAAAGAAGCAAATAGTCCAGGAAATTTTCTGTGGCAGAGCTTTGATTATCCTGGTGACACTTTACTTGCTGGGATGAGGCTTCAAAGTAACACTGTAAGTGGTCAACATACATCTCTGACATCTTGGACAAACACAGAAGATCCTGCTATGGGGGACTTTTCATACTATATAGATACTCATGGCCTTCCTCAAGTAGTTATTACAAAGGGAGGGACTTTATTGTTCAGAGCAGGTTCATGGAATGGTTATCTTTTAACTGGGATTGCATCAGAAACACTCTATAAATATTTCAATTTAAGTTTTGAATTAACTGGGCATGAAGTTTCTTATGGATATGAACTCTTAAACAGTTCTATTATTTCAAGATACATGCTCACTCCAACAGGTATTGTGCAACGTTTTACATGGTCAGATCAGACACAAAATTGGCAGCTTTTCCTAGCTGGCCCTATAGACCAGTGTGACAATTATGCCATTTGTGGTAAAAATGCTAATTGTGATGTTAATAATTCTCCAATATGTGAATGCCTGGAGGGTTTCAAGCCCAAATCTCAAGAAAAATGGAATTCACTGGATTGGTCTGGTGGGTGTGTTAGGAGAGTAAATTTGGATTGTGATCACAGAGATGGGTTTCTGAAATATACAGGAATGAAGTTGCCAAACACGTCCTACTCCTTGTTTGATATGAACATGAACCTTCAGCAATGTGAGAATTTATGCTTGAAAAACTGCTCTTGCACAGCATATGCAAATTTAGATATCAGAAATGGTGGGAGTGGTTGTTTGCTTTGGTTTAATGACATTGTGGACATGAGAAAGCTACCCTCTGGAGGACAAGACCTTTATGTAAAAGTGGCAGCTTCAGAACTAGTCAAGTTTTCTTGTGTGTTGACTAGAAGTGATTTTAATCTCTCAGATCATAATGAGAACAACAAGCATTTCAATAAGAAGCTCTTAGCAGGAATTCTTGCAGGCTCTATTCTTTTCATCTTGGTAATGACAGTTATTGGAGTGGCCAAACTACGAAGAATAAAACTCAAGAAAACAGACTTTTCAGAGAACAGCATAACAAAAATTTGGAGTCGCCCTGATATGAAAGAAAAAGAAGACATTGACATACCAATATTTGATTTTTCAACCATAGCCAATGCTACTAATCACTTCTCTATCAATAATAAATTGGGAGAAGGTGGATTTGGTCCAGTTTACAAGGGTACACTTACAAATTACCAAGATATAGCAGTGAAGAGGCTTAGCAATAATTCAGGTCAAGGACCAGAAGAGTTCATAAATGAAGTTATGCTAATTGCGAATCTTCAGCACCGAAATCTTGTGAAACTTCTTGGATGTTGCATTCAGGATAATGAGAGACTTTTGATTTATGAATTCATGCCAAATAGAAGCTTGGACTACTTTATTTTTGATAAAACTAAAAGTAGTTCACTAAATTGGGCTCAGCGCTTCCAAATTATTGGTGGAATTGCTCGAGGACTTCTCTATCTTCACGAAGATTCAAGACTAAGGATTGTTCATAGAGATCTCAAGACCAGTAATATTCTTCTTGATGAAAATATGAATCCAAAAATATCAGATTTTGGTCTTGCTAGAATATTTGGGGGAGATGAAACCGAATACAAAACAAAGAGAGTAGTGGGAACTTATGGCTATATTTCTCCCGAGTTTGCAGTCCGTGGATTTTTCTCAGCGAAATCGGATGTTTTTAGCTTTGGTGTTATTATGCTAGAGATAATTAGTGGAAGGAAGAACAGCGAATTTTTTGACAGTCATAATCTTGACCTTCTCTGCCATGCATGGAGACTGTGGTGTGAAGAGAAACCATTGGAGCTGATAGATACATCATTAGGCGATTCTATGGCTCTACAAGAAGTGTTAAGATGTATTCATATCGGGCTCTTATGTGTACAAGAGAAACCAGAGGATAGGCCAGACATGTCAGTTGTAGTCTTAATGTTGAATGGTGAGAAACCATTGCCTAGACCAAAGGAGCCCGCGTTTTATCCACACCAGTTTGGTTCTCCTACGGGCTATTATGAACTGCGCTCAACCAATGAAATTTCTGTTAGCCTGTTAGATGCAAGATAG 2496 0.3858 MESFKVLFLCSFLFNLIPQFNTLDIISSGQSIKGNETLISSAETFEAGFFSFGNSNSQYFGIWYKDLSPRTVVWVANRDTPLGNSSGVLQLSDGGNLVILDGTGATMWSSNASATAKKPILELLESGNLVVKEANSPGNFLWQSFDYPGDTLLAGMRLQSNTVSGQHTSLTSWTNTEDPAMGDFSYYIDTHGLPQVVITKGGTLLFRAGSWNGYLLTGIASETLYKYFNLSFELTGHEVSYGYELLNSSIISRYMLTPTGIVQRFTWSDQTQNWQLFLAGPIDQCDNYAICGKNANCDVNNSPICECLEGFKPKSQEKWNSLDWSGGCVRRVNLDCDHRDGFLKYTGMKLPNTSYSLFDMNMNLQQCENLCLKNCSCTAYANLDIRNGGSGCLLWFNDIVDMRKLPSGGQDLYVKVAASELVKFSCVLTRSDFNLSDHNENNKHFNKKLLAGILAGSILFILVMTVIGVAKLRRIKLKKTDFSENSITKIWSRPDMKEKEDIDIPIFDFSTIANATNHFSINNKLGEGGFGPVYKGTLTNYQDIAVKRLSNNSGQGPEEFINEVMLIANLQHRNLVKLLGCCIQDNERLLIYEFMPNRSLDYFIFDKTKSSSLNWAQRFQIIGGIARGLLYLHEDSRLRIVHRDLKTSNILLDENMNPKISDFGLARIFGGDETEYKTKRVVGTYGYISPEFAVRGFFSAKSDVFSFGVIMLEIISGRKNSEFFDSHNLDLLCHAWRLWCEEKPLELIDTSLGDSMALQEVLRCIHIGLLCVQEKPEDRPDMSVVVLMLNGEKPLPRPKEPAFYPHQFGSPTGYYELRSTNEISVSLLDAR. 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05049 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Seca3g05049 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 145 - -
Seca3g05049 831 Gene3D Transferase(Phosphotransferase) domain 1 595 795 - -
Seca3g05049 831 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 212 IPR036426 -
Seca3g05049 831 Gene3D Hepatocyte Growth Factor 333 414 - -
Seca3g05049 831 SMART blect_4 29 148 IPR001480 -
Seca3g05049 831 SMART ntp_6 337 416 IPR003609 -
Seca3g05049 831 SUPERFAMILY Protein kinase-like (PK-like) 502 809 IPR011009 -
Seca3g05049 831 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Seca3g05049 831 ProSiteProfiles PAN/Apple domain profile. 336 417 IPR003609 -
Seca3g05049 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 484 594 - -
Seca3g05049 831 Pfam PAN-like domain 336 402 IPR003609 -
Seca3g05049 831 CDD PAN_AP_plant 332 417 - -
Seca3g05049 831 Pfam S-locus glycoprotein domain 206 315 IPR000858 GO:0048544
Seca3g05049 831 CDD STKc_IRAK 525 791 - -
Seca3g05049 831 Gene3D - 20 145 IPR036426 -
Seca3g05049 831 ProSiteProfiles Protein kinase domain profile. 519 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05049 831 Pfam D-mannose binding lectin 71 173 IPR001480 -
Seca3g05049 831 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 779 - -
Seca3g05049 831 CDD B_lectin 30 148 IPR001480 -
Seca3g05049 831 PIRSF SRK 1 830 IPR024171 GO:0004674
Seca3g05049 831 Gene3D Phosphorylase Kinase; domain 1 494 594 - -
Seca3g05049 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 595 796 - -
Seca3g05049 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 335 416 - -
Seca3g05049 831 SMART serkin_6 519 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05049 831 Pfam Protein tyrosine and serine/threonine kinase 520 786 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05049 Seca-Chr3 98862178 98866118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05049 439 806 Receptor kinase-like Gene Family AT4G23190 52.011 1.07e-128 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05049 PK_Tyr_Ser-Thr 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05049 - - ccaj:109805721 1192.95