Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05046 ATGGAGAGCTTCAAAAGGCTGGGTCTGTACTCTCTGTTTCTCTCCTTGATGATAAGCATGTCCTCCACATTGGACATGATTACTCCAACCCAACCCATCCGAGATGGTAAGAATGAAAAGAATGAAACTTTGGTTTCAACAAATGGAACCTTCGAAGCAGGATTCCTCAGCCTTGAAAATTCATTAACCCGTTACTTTGGTGTTTGGTACAAAAATATTTCTCCCAGAACAGTTGTATGGGTAGCCAACAGAGTAAAACCACTCAATGATCGCTCAGGTGTCTTGTTAGTAGACAGTGAAGGAATTCTTACAATTATGGATGGCACAGGAACCAAAATCTGGTCCACAAATGCATCAAAAACAGGGGAGAAGCAAGTTGTGGTGAAGCTGTTGGAAACAGGAAACATGGTTGTGCAAGATGGAAATAACTTGGATGGCCTTTTGTGGCAGAGCTTTGATTATCCTGGTGACACTTTACTCCCAGGAATGAAAATTGGAAGAAATTCAAAAACAGGTCAAATTTGGGCTTTGAGATCTTGGAAATCTTTGCAAGATCCTACTCCAGGTGAATATTCATTTAGCATTGATATTCATGGACTTCCTCAATTAGTTATTACAAAGAATGGTACTACACTTTACAGACCAGGGTCATGGAATGGGCTCAGTATTACAGGTCTCCCAGATCAAATCACTGATCAATTTGTCAAACCTCTTTTTGTGACAAATAAAGAGGGAGAAGTCTTCTATGAGATTGAACTCAAAAATAGCTCAACTATCATGAGAAGCAGACTGGTTCCACAAGGCTATCAACTACATTTAATTTGGTCATATCAGACACAACAATGGGATTGGAAATACCCTGGTCCTTTTGATCAGTGTGAAAGATATTCCATGTGTGGTGCAAATACTAATTGTGATGCTGATGGGAATGAGCACTGTGAATGCTTGATAGGATTCAAAGCCATCTCTACAGATTCAGCAGGTAAGCTTAGTGGGTGTGTTCGAACCACTCCACTAGACTGTAATAAGGGAGATAATTTTCAGAAGTATAAGGGAATGAAATTGCCAGACACATCTTCATCTTGGTATGATAAGACCATTAGTCTACAGGAATGTGAGAAATTATGTTTGAGAAACTGCTCTTGTACTGCATATGCTAAATTGAATATCAGTGGCATGGGAAGTGGCTGCTTGCATTGGTTTACCAACATTGTTGACATGAGGAAACTCCCTCAGGGAGGACAAGATTTTTATTTACGAGTTAGTCCAGCTTCAGAGCAAGATCACAGTTTCAACGGGAAGAAACTAGCAGGAACTGTGGTTGGCTGTACTATATTCGTGATTGGCATTATAGTATTTGGATTGATATTATGCATTAGGAGGAAGAAACTCATGCAGCCAGGAAACGGGAGTGAGAAGGATGACATTGATTTAGCAACATTTGATTTTTTAACCATTTCTAATGCCACAAATCACTTTTCACAAAGTAACAAATTAGGACAAGGTGGCTTTGGATCCGTGTACAAGGGAGTATTACCAAATGGGCAAGAGATTGCAGTTAAGAGGCTCTCTAAAACTTCTGGACAAGGTTTGGAGGAGTTCAAAAATGAAGTCATGTTGATTGCAAAACTTCAACACCGCAATCTTGTAAAGCTTCTTGGTTGTTCTATTCAACAAGACGAGAAATTGTTGATTTATGAATTCATGCCTAATAGAAGTTTGGACTACTTCATTTTTGATTCAATAAAACAAAAATTATTGAGTTGGACTAAAAGATTCGAAATTATTGGTGGAATTGCTCGGGGGCTTTTGTATCTTCATCAAGATTCTAGACTAAAGATCATTCATAGGGATCTAAAAACTAGTAATGTTCTTCTTGACAATAATATGATCCCAAAAATATCAGATTTTGGTATGGCCAGAATTTTTGGACTAGATCAAGATGAAGCAAATACGAACAGAGTAATGGGCACATAG 1977 0.3854 MESFKRLGLYSLFLSLMISMSSTLDMITPTQPIRDGKNEKNETLVSTNGTFEAGFLSLENSLTRYFGVWYKNISPRTVVWVANRVKPLNDRSGVLLVDSEGILTIMDGTGTKIWSTNASKTGEKQVVVKLLETGNMVVQDGNNLDGLLWQSFDYPGDTLLPGMKIGRNSKTGQIWALRSWKSLQDPTPGEYSFSIDIHGLPQLVITKNGTTLYRPGSWNGLSITGLPDQITDQFVKPLFVTNKEGEVFYEIELKNSSTIMRSRLVPQGYQLHLIWSYQTQQWDWKYPGPFDQCERYSMCGANTNCDADGNEHCECLIGFKAISTDSAGKLSGCVRTTPLDCNKGDNFQKYKGMKLPDTSSSWYDKTISLQECEKLCLRNCSCTAYAKLNISGMGSGCLHWFTNIVDMRKLPQGGQDFYLRVSPASEQDHSFNGKKLAGTVVGCTIFVIGIIVFGLILCIRRKKLMQPGNGSEKDDIDLATFDFLTISNATNHFSQSNKLGQGGFGSVYKGVLPNGQEIAVKRLSKTSGQGLEEFKNEVMLIAKLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDYFIFDSIKQKLLSWTKRFEIIGGIARGLLYLHQDSRLKIIHRDLKTSNVLLDNNMIPKISDFGMARIFGLDQDEANTNRVMGT. 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05046 658 Pfam S-locus glycoprotein domain 213 321 IPR000858 GO:0048544
Seca3g05046 658 ProSitePatterns Protein kinases ATP-binding region signature. 499 521 IPR017441 GO:0005524
Seca3g05046 658 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 186 IPR036426 -
Seca3g05046 658 CDD PAN_AP_plant 337 422 - -
Seca3g05046 658 ProSiteProfiles PAN/Apple domain profile. 341 422 IPR003609 -
Seca3g05046 658 ProSiteProfiles Zinc finger SWIM-type profile. 365 408 IPR007527 GO:0008270
Seca3g05046 658 Pfam PAN-like domain 341 407 IPR003609 -
Seca3g05046 658 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 569 658 - -
Seca3g05046 658 Pfam D-mannose binding lectin 77 181 IPR001480 -
Seca3g05046 658 SUPERFAMILY Protein kinase-like (PK-like) 478 658 IPR011009 -
Seca3g05046 658 ProSiteProfiles Bulb-type lectin domain profile. 24 151 IPR001480 -
Seca3g05046 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
Seca3g05046 658 Pfam Protein kinase domain 494 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05046 658 ProSiteProfiles Protein kinase domain profile. 493 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05046 658 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 459 568 - -
Seca3g05046 658 SMART ntp_6 342 421 IPR003609 -
Seca3g05046 658 SMART serkin_6 493 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05046 658 Gene3D - 21 152 IPR036426 -
Seca3g05046 658 Gene3D Hepatocyte Growth Factor 338 419 - -
Seca3g05046 658 CDD B_lectin 41 155 IPR001480 -
Seca3g05046 658 Gene3D Phosphorylase Kinase; domain 1 460 568 - -
Seca3g05046 658 Gene3D Transferase(Phosphotransferase) domain 1 569 658 - -
Seca3g05046 658 SMART blect_4 35 155 IPR001480 -
Seca3g05046 658 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 652 - -
Seca3g05046 658 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05046 Seca-Chr3 98674570 98678762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05046 447 658 Receptor kinase-like Gene Family AT4G23130 63.426 4.33e-86 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05046 Pkinase 5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05046 - - gmx:100802416 902.508