Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05033 ATGGCCATTCATCTTGCTTTGCTGATTATTATTTCCAAGCTACTATTGTTATTGTCTCAAATTTCCTCTGCAACTGATACCATTACCCAGCTTCAGTCACTTCCTGATGGCAGCACCTTGGTTTCTAAGAATGGGACCTTTGAGTTGAGTTTCTTCAATCTGGGTAGTTCCTCAAACCGCTATGTAGGAATTCGTTACAAAAATATCCCAGTTAAAAGATTCGTTTGGGTTGCCAACCGTGACAATCCAATCAAAGACAACTCCAGCAAGTTGGTCATAAGCGAAGAGGGAAACCTCGTGCTTCTCAACCGGAATGAGTCTGTTATTTGGTCAACAAACGCAACAACAAAGGCTTCAAGTCCCATTGTGCAGCTCTTAGACAATGGAAATTTAATACTTAGAGATGAGAAGGACAACAACAACGAAGAAAATTATCTATGGCAGAGCTTTGAGCATCCTTGTGATACATTATTACCAGAAATGAAGATTGGATGGAGCCGAAAAACTGGTCTTAATACCCGTCTCGTTGCTTGGAAAAATTGGGATGATCCATCTTCTGGAGACTTTACTTCGGAGATAGAGCTTACGAACAATCCAGAAACCGTGGTTTGGAAGGGCTCAGAGAAGTATTATAGGTCGGGCCCGTACACTAATACTCAGTCCACTGGACTAGTTGGATTTGGGCCCAACACAATTTACGATTTCACGTTTGTCAACAACAAAGATGAAGTGTATTACATGTACACCCTCAAGAGTTCTGTGATTTCACTTGTTCTTGTGAACCAAACCCTTTTAAGTCGTCAGCGCATCACATGGGTTCCTGAAACCAACACTTGGACTATTTACTTACCCGCGCCACAAGACAATTGTGATCCTTATAATACTTGCGGTGCAAATGGAAATTGCATAATTGAAAGATCGCCAAGGTGTCAATGTTTAGATGGATTCGAGCCAAAATCACCTCAGCAGTGGAATGCATTGGATTGGAGACAAGGATGTGTGCGTAGTGGAAACTGGAGCTGTGGGGTCAAAAACAGAGATGGTTTTCATAGAGTTGTTGGGATGAAATTGCCTGACACTAATAATTCTTGGGTTTATGAAAATATGACACTGGAGGATTGCAAGGCTAAATGCTTGGAAAATTGTTCGTGCACAGCTTATGCAAGCTTAGACCCGAGTGGAGCGGGACGTGGTTGTTCCATCTGGGTGGGTGATCTTCTTGATTTGAGAGTTACACAAAACGGGCAAGATCTATACGTTCGAGTGGACGTTTCAGCAGATGAAAATCATGGGCATAGGAAAAGGGTAATCTTGGCGACTGTAATCACAATTCCAGTGGTCCTTGTGATGCTATTGACATCCTCCTGCATTTACTGGACAAAAGCAAAGCATAAAGTCAAAGAGGAAATAGACAAAATCAAGTGGACAGAAGAGATAGATGAAGATAATGATGAAGATCTGGAGCTTCCTTTGTTTGATATTGCTACATTACTTAATGCCACCAATAATTTCTCAATTAACAACAAGCTTGGTGAAGGTGGTTTTGGACCTGTATATAAGGGTATATTGCTAGATGGACAAGAGATTGCAATAAAAAGGCTTTCAAGAAGTTCTGGACAAGGATTGAGGGAATTTAAGAATGAAGTTATATTGTGTACTAAACTTCAACATCGAAATCTTGTTAAAGTTATTGGTTGTTGCATTGAAGAAGAGGAGAAAATGCTACTCTATGAATACATGCCCAACAATAGCCTTGATTCATTTCTATTCGATTCAGTTCGAAGTAAATTGTTAGATTGGTCTATGCGTTTTAACATCTTGAATGGAATTGCTCGAGGGCTTCTTTATCTTCATCAAGATTCAAGACTAAGGATCATACATAGAGATCTAAAAGCAAGTAATATTTTATTAGATAATGATATGAATCCAAAAATTTCAGATTTCGGTATGGCCAGAATGTGTGGAGGTGATCAAATTGAAGGACAAACAAGTAGGATAGTTGGGACATTTGGTTATATGGCACCTGAATATGCCATTGATGGATTATTCTCAATAAAATCAGACGTGTTTAGCTTTGGGGTATTATTGCTAGAAATTATAAGCGGAAAGAAAAATAGGGCACTTACTTACCATGATCATGATCACAATCTTATTGGGCATGCATGGAGATTATGGACACAGGACATTCCACATGAATTGATTGATGATTGTCTGAAGGACTCGTGTATTATATCTGAAGCAGTACGTTGCATTCAAATTGGTCTTTTATGTCTACAACTTCAACCTGATGACAGGCCAAACATGACATCTGTAGTTGTGATGTTGAGTAGTGAAAATGCTTTACAACAACCAAAAGAACCCGGATTCTTAATCAAAAAGGCCACAATTGAAGAATATTCTTTTGAAAAACAAACATCTTCTTCAATGAATGAAATAACGGTCTCTACATTAAATGCCAGGTAG 2463 0.391 MAIHLALLIIISKLLLLLSQISSATDTITQLQSLPDGSTLVSKNGTFELSFFNLGSSSNRYVGIRYKNIPVKRFVWVANRDNPIKDNSSKLVISEEGNLVLLNRNESVIWSTNATTKASSPIVQLLDNGNLILRDEKDNNNEENYLWQSFEHPCDTLLPEMKIGWSRKTGLNTRLVAWKNWDDPSSGDFTSEIELTNNPETVVWKGSEKYYRSGPYTNTQSTGLVGFGPNTIYDFTFVNNKDEVYYMYTLKSSVISLVLVNQTLLSRQRITWVPETNTWTIYLPAPQDNCDPYNTCGANGNCIIERSPRCQCLDGFEPKSPQQWNALDWRQGCVRSGNWSCGVKNRDGFHRVVGMKLPDTNNSWVYENMTLEDCKAKCLENCSCTAYASLDPSGAGRGCSIWVGDLLDLRVTQNGQDLYVRVDVSADENHGHRKRVILATVITIPVVLVMLLTSSCIYWTKAKHKVKEEIDKIKWTEEIDEDNDEDLELPLFDIATLLNATNNFSINNKLGEGGFGPVYKGILLDGQEIAIKRLSRSSGQGLREFKNEVILCTKLQHRNLVKVIGCCIEEEEKMLLYEYMPNNSLDSFLFDSVRSKLLDWSMRFNILNGIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGMARMCGGDQIEGQTSRIVGTFGYMAPEYAIDGLFSIKSDVFSFGVLLLEIISGKKNRALTYHDHDHNLIGHAWRLWTQDIPHELIDDCLKDSCIISEAVRCIQIGLLCLQLQPDDRPNMTSVVVMLSSENALQQPKEPGFLIKKATIEEYSFEKQTSSSMNEITVSTLNAR. 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05033 820 Gene3D Transferase(Phosphotransferase) domain 1 580 791 - -
Seca3g05033 820 Gene3D - 18 150 IPR036426 -
Seca3g05033 820 ProSiteProfiles Protein kinase domain profile. 504 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05033 820 Gene3D Hepatocyte Growth Factor 340 424 - -
Seca3g05033 820 Pfam Domain of unknown function (DUF3403) 776 820 IPR021820 GO:0004674
Seca3g05033 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Seca3g05033 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 184 IPR036426 -
Seca3g05033 820 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Seca3g05033 820 Gene3D Phosphorylase Kinase; domain 1 463 579 - -
Seca3g05033 820 Pfam S-locus glycoprotein domain 211 320 IPR000858 GO:0048544
Seca3g05033 820 Pfam PAN-like domain 341 409 IPR003609 -
Seca3g05033 820 SUPERFAMILY Protein kinase-like (PK-like) 486 783 IPR011009 -
Seca3g05033 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 150 - -
Seca3g05033 820 Pfam D-mannose binding lectin 74 179 IPR001480 -
Seca3g05033 820 ProSiteProfiles EGF-like domain profile. 286 322 IPR000742 -
Seca3g05033 820 ProSiteProfiles PAN/Apple domain profile. 341 423 IPR003609 -
Seca3g05033 820 SMART serkin_6 504 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05033 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 469 579 - -
Seca3g05033 820 Pfam Protein tyrosine and serine/threonine kinase 505 773 IPR001245 GO:0004672|GO:0006468
Seca3g05033 820 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 766 - -
Seca3g05033 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 580 783 - -
Seca3g05033 820 SMART blect_4 31 153 IPR001480 -
Seca3g05033 820 PIRSF SRK 1 820 IPR024171 GO:0004674
Seca3g05033 820 CDD PAN_AP_plant 340 422 - -
Seca3g05033 820 CDD B_lectin 32 153 IPR001480 -
Seca3g05033 820 CDD STKc_IRAK 510 775 - -
Seca3g05033 820 SMART ntp_6 344 422 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05033 Seca-Chr3 98436228 98441143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05033 436 792 Receptor kinase-like Gene Family AT4G23230 53.911 1.50e-125 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05033 PK_Tyr_Ser-Thr 2.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05033 - - tpra:123904477 1167.14