Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05032 ATGGCCACTCTTCTTACTTTGCTTGTTATTTCCAAGCTACTATTGTCATTGTCTCAAATTTCCTCTGCAACTGATACCATTACCCAGCTTCAGTCACTTCCTGATGGCAGCACCTTGGTTTCTAAGGATGGGACCTTTGAGTTGGGTTTCTTCAATCCTGGTAGTTCCTCAAACCGCTATGTTGGAATCTGGTACAAAAATATCCCTTTAACAACAGTCGTTTGGGTTGCCAACCGTGACAATCCAATCAAAGACAACTCCAGCAAGTTGGTTATAAACCAAGAGGGAAACCTTGTGCTTCTCAACCAGAACCAATCTTATCTTTGGTCAACAAACGCAACAGCAAAGGCTTCCCGTCCCGTTGTGCAGCTCTTGGACAATGGAAATTTGGTAATTAGAGATGAAAACGACAACAACAATGAAGAAAGTTTTCTATGGCAGAGCTTTGACTATCCTTGTGATACAATGTTACCAGAAATGAAGATTGGATGGGATCGAAAAAGTGGTTTAAATAGGCGTCTCGTTGCTTGGAAAAATTGGGAAGACCCATCTTCAGGAGACTTTACTTCTGATATAGTGCTTAGCAACAATCCTGAAAGCATAATATGGAAGGGCTCAACAAAGTATTACAGGACAGGACCATGGACTGGTGCTCAGTCCAGTGGAGTAATCGGATTGAGGACTAACCCAATTTTCGATTACAAATTTGTCACAAATAAAGATGAAGTGTATTACATGTACACCCTCAAGAATAGTTCTGTGATTTCCATAATTGTTTTGAACCAAACCCTTTCTGTTCGTCAACGTCTCATATGGAATTCTCAATCCAAAACTTGGACTGCTTACCAAACCTTGCCACAGGACAGTTGTGATGTTTATAATGTTTGCGGTCCAAATGGAAATTGCATAATTGATAGATCGCCAAGGTGTCAATGTTTAGATGGATTTGAGCCAAAATCACCTCAGCAGTGGAATGCAGTGGATTGGTCACAAGGATGTGTGCGTAGTGGAAACTGGAGCTGTGGGGTCAAAAACAGAGATGGTTTTCGTAGATTTTCTGGGATGAAATTGCCAGAGACTACACATTCTTGGGTTAATGAAAATATGACACTGGAGGGTTGCAAGACCAAATGCTTGGAAAATTGTTCATGCACTGCTTATGCAAACTTAGACCCAAGTGGAGCGGGTAGTGGTTGTTCCATATGGTATGGTGATCTTCTTGATTTGAGAGTTACACAAAGCGGGCAAGATCTTTATGTTCGAATTGATGCTTCGGATATGGGTAAAGGCTTTGATGCAAAACAGGGGCGTAGGAAAAAGGTAGTCTTGGCGACTACAATTACAATTCCAGTGGTTCTTGTGATGCTAATGATACTCTCCTACATTTACATGACCAAAACAAACCATAAAGGTAAATTTCTTATAAAGGAATTAGAGAAAGCCAAGTGGACTGAAGAGAAAGATGAAGGAAATGATGAAGATTTTGATCTTCCTATATTTGATCTTACTAGAATACTTCATGCCACCAATAACTTCTCAATTGATAACAAGCTCGGTGAAGGTGGTTTTGGGCCGGTATACAAGGGTATATTGGAAGGTGGAAAAGAAATTGCAATTAAACGACTTTCAAGAACTTCTGGACAAGGAATGAAAGAATTCAAGAATGAAGTTATATTGTGTGCCAAACTTCAACATCGAAATCTTGTTAAGGTTATTGGTTGTTGCATTGAAGGAGAGGAGAAAATGCTAATCTATGAATACATGTCCAACAAAAGCTTTGATTCATTTCTCTTCGATTCATCTCAAAGCAAATTGTTAGATTGGTCTATGCGCTTCAACATCTTGTATGGAATTGCTCGAGGACTTCTCTATCTTCATCAAGACTCTAGATTAAGGATCATACATAGAGATCTTAAAGCAAGTAATATTTTATTAGACAAGGATATGAATTCAAAAATTTCAGACTTTGGCATGGCTAGAATGTGTGGAGGTGATCAAATTGAAGGAAAAACAAGCAGAATAGTTGGGACATATGGTTATATGGCACCTGAATATGCCATTGATGGGTTATTCTCAATAAAATCAGATGTATTTAGCTTCGGTGTATTATTGCTAGAAATAATAAGTGGAAAGAAAAATAGAGCACTTACTTACCATGATCATGATTACAATCTTATTGGGCAGGCATGGAGATTGTGGAAAGAAGGCATCCCACATGAATTGATTGATGATTGTTTGAGGGACTCGTGTATTCTATCTGAAGTTGTACGTTGTATTCACATTGGTCTTTTATGTCTACAACATCATCCAGATGATAGGCCAAACATGACATATGTGGTTGTGATGCTAAATAGTGAAAATACTTTACCACAACCAAAAGAACCTGGCTTCATAATTAAAAAGGTCTCAAGTGGAGGAGAATATTCTTTCGGGAAACAAACAGTTTCATCAATCAATGATGTAACTATTTCAATATTAGATGCTAGATAG 2490 0.3843 MATLLTLLVISKLLLSLSQISSATDTITQLQSLPDGSTLVSKDGTFELGFFNPGSSSNRYVGIWYKNIPLTTVVWVANRDNPIKDNSSKLVINQEGNLVLLNQNQSYLWSTNATAKASRPVVQLLDNGNLVIRDENDNNNEESFLWQSFDYPCDTMLPEMKIGWDRKSGLNRRLVAWKNWEDPSSGDFTSDIVLSNNPESIIWKGSTKYYRTGPWTGAQSSGVIGLRTNPIFDYKFVTNKDEVYYMYTLKNSSVISIIVLNQTLSVRQRLIWNSQSKTWTAYQTLPQDSCDVYNVCGPNGNCIIDRSPRCQCLDGFEPKSPQQWNAVDWSQGCVRSGNWSCGVKNRDGFRRFSGMKLPETTHSWVNENMTLEGCKTKCLENCSCTAYANLDPSGAGSGCSIWYGDLLDLRVTQSGQDLYVRIDASDMGKGFDAKQGRRKKVVLATTITIPVVLVMLMILSYIYMTKTNHKGKFLIKELEKAKWTEEKDEGNDEDFDLPIFDLTRILHATNNFSIDNKLGEGGFGPVYKGILEGGKEIAIKRLSRTSGQGMKEFKNEVILCAKLQHRNLVKVIGCCIEGEEKMLIYEYMSNKSFDSFLFDSSQSKLLDWSMRFNILYGIARGLLYLHQDSRLRIIHRDLKASNILLDKDMNSKISDFGMARMCGGDQIEGKTSRIVGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLEIISGKKNRALTYHDHDYNLIGQAWRLWKEGIPHELIDDCLRDSCILSEVVRCIHIGLLCLQHHPDDRPNMTYVVVMLNSENTLPQPKEPGFIIKKVSSGGEYSFGKQTVSSINDVTISILDAR. 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05032 829 Gene3D Hepatocyte Growth Factor 340 423 - -
Seca3g05032 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 588 791 - -
Seca3g05032 829 Pfam PAN-like domain 341 409 IPR003609 -
Seca3g05032 829 ProSiteProfiles Protein kinase domain profile. 512 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05032 829 SMART ntp_6 344 422 IPR003609 -
Seca3g05032 829 Gene3D - 17 149 IPR036426 -
Seca3g05032 829 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 774 - -
Seca3g05032 829 Pfam S-locus glycoprotein domain 210 320 IPR000858 GO:0048544
Seca3g05032 829 SMART blect_4 30 152 IPR001480 -
Seca3g05032 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Seca3g05032 829 ProSiteProfiles EGF-like domain profile. 286 322 IPR000742 -
Seca3g05032 829 Gene3D Phosphorylase Kinase; domain 1 484 587 - -
Seca3g05032 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 149 - -
Seca3g05032 829 CDD STKc_IRAK 518 784 - -
Seca3g05032 829 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Seca3g05032 829 SMART serkin_6 512 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05032 829 SUPERFAMILY Protein kinase-like (PK-like) 493 794 IPR011009 -
Seca3g05032 829 PIRSF SRK 1 829 IPR024171 GO:0004674
Seca3g05032 829 Gene3D Transferase(Phosphotransferase) domain 1 588 794 - -
Seca3g05032 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Seca3g05032 829 CDD B_lectin 31 152 IPR001480 -
Seca3g05032 829 ProSiteProfiles PAN/Apple domain profile. 341 423 IPR003609 -
Seca3g05032 829 CDD PAN_AP_plant 340 422 - -
Seca3g05032 829 Pfam Protein tyrosine and serine/threonine kinase 513 780 IPR001245 GO:0004672|GO:0006468
Seca3g05032 829 Pfam Domain of unknown function (DUF3403) 786 829 IPR021820 GO:0004674
Seca3g05032 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 476 587 - -
Seca3g05032 829 Pfam D-mannose binding lectin 72 178 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05032 Seca-Chr3 98386077 98389786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05032 473 829 Receptor kinase-like Gene Family AT4G23150 53.134 2.20e-124 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05032 PK_Tyr_Ser-Thr 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05032 - - tpra:123915292 1217.6