Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05030 ATGACCAAACGAAAGCATAGAGGGTACATTGTTGGACAAGAGATTGCAGTCAAAAGGCTTTCAAGAAGTTCTGGACAAGGACTAAATGAATTTAAGAATGAAGTTGTATTGTGTGCCAAACTTCAACACCGAAATCTTGTTAAGGTTCTTGGTTGTTGCATTGAAGGAGAGGAGAAAATGCTACTCTATGAATACATGCCCAACAAAAGTCTTGATTCATTTCTTTTTGATTCGATTCAAAGTAAATTATTAGATTGGCCTATGCGCTTTAACATCCTCTATGGAATCGCTAGGGGGCTTCTTTATCTTCATCAAGATTCTAGATTGAGGATCATACACAGAGATTTAAAAGTGAGTAATATTTTATTAGACAATGAAATGAATCCAAAAATTTTAGATTTTGGAATGGCCAGAATGTGTGGAGGTGATCAAATTGAAGGGAAAACAAGTAGAATAGTTGGGACATATGGTTATATGGCACCTGAATACGCCATTGATGGACTGTTCTCTACAAAATCAGATGTATTTAGCTTTGGCGTTTTATTACTAGAAATTATAAGCGGAAAGAAAAACAGGACACTTACCTACCATGACCATGGTCTCAATCTTATTGATCATGCATGGAGCTTATGGAAAGAGGGCATTCCACATGAATTGATTGATGATTGTTTGAGGAGGGACTCATGTATTCTATCTGAAGCTCGACGTTGCCTTCAAATTGGTCTTTTATGTCTTCAACACCAACCTGATGATAGGCCAAGTATGACATCTGTGGTTGTGATGTTAAACAGTGAAAATGTTTTACCTCAACCAAAGGAACCCGGTTTCATAATTAAAAAGATCTCAATTGAAGGAGAACATTTTTCTGGAAAGGAAACATCTTCAATTAATGAAGTAACTATTTCAGTATTAAATGCCAGATAG 924 0.3604 MTKRKHRGYIVGQEIAVKRLSRSSGQGLNEFKNEVVLCAKLQHRNLVKVLGCCIEGEEKMLLYEYMPNKSLDSFLFDSIQSKLLDWPMRFNILYGIARGLLYLHQDSRLRIIHRDLKVSNILLDNEMNPKILDFGMARMCGGDQIEGKTSRIVGTYGYMAPEYAIDGLFSTKSDVFSFGVLLLEIISGKKNRTLTYHDHGLNLIDHAWSLWKEGIPHELIDDCLRRDSCILSEARRCLQIGLLCLQHQPDDRPSMTSVVVMLNSENVLPQPKEPGFIIKKISIEGEHFSGKETSSINEVTISVLNAR. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05030 307 Pfam Protein tyrosine and serine/threonine kinase 13 261 IPR001245 GO:0004672|GO:0006468
Seca3g05030 307 FunFam Uncharacterized protein 4 65 - -
Seca3g05030 307 Gene3D Transferase(Phosphotransferase) domain 1 66 272 - -
Seca3g05030 307 SUPERFAMILY Protein kinase-like (PK-like) 9 262 IPR011009 -
Seca3g05030 307 ProSitePatterns Serine/Threonine protein kinases active-site signature. 111 123 IPR008271 GO:0004672|GO:0006468
Seca3g05030 307 SMART serkin_6 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05030 307 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 289 - -
Seca3g05030 307 ProSiteProfiles Protein kinase domain profile. 1 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05030 307 Pfam Domain of unknown function (DUF3403) 265 307 IPR021820 GO:0004674
Seca3g05030 307 Gene3D Phosphorylase Kinase; domain 1 3 65 - -
Seca3g05030 307 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 66 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05030 Seca-Chr3 98312302 98314395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05030 6 307 Receptor kinase-like Gene Family AT4G11530 55.627 8.44e-114 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05030 PK_Tyr_Ser-Thr 6.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05030 - - tpra:123915292 479.174