Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05029 ATGGCCATTCTTCTTGCTTTGCTTATTACTATCTCCAAGCTACTATTGTTATTCTCTCAAATTTCCTCTGCAACTGATACCATTACCCAGTCTGAGCCACTTCCCGATGGCAGCACTTTGGTTTCTAAGGATGGAACCTTTGAGTTGGGTTTCTTCACTCCCGGTAGTTCCTCAAACCGCTATGTAGGGATCTGGTACAAAAATATCCCCGTTAGAATAGTAGTTTGGGTTGCCAACCGTGACAGTCCAGTGAAAAACAACTCCAGCAGGTTGATAATAAGCCAAGAGGGAAACCTCGTACTTCTCACTCAGAATCAGTCTATTGTCTGGTCAACAAATGCAACAACAAACGCTTCAAGTCCAGTTGTGCAGCTCTTGGACAGTGGAAATTTAGTAGTTAGAGATGAGAAGAAGAAGAACAACAACAACAATGAAGAGAGTTTTCTGTGGCAGGGCTTTGACCATCCTTGTGATACATTATTACCAGGAATGAAGTTTGGATGGGACCGTAAAACTGGTCTTATTAGGCGTCTCACTGCTTGGAAAAGTTGGGATGACCCTTCTTCTGGAGACTTTACTACAGCTATGGTACATACCAATCCTGAAATGGTAGTTTGGAAGGGCTCAACTAAGTACTACAGGACTGGACCATGGACTGGTGTTAAGTACAGTGGAGTATTGGGATTAAAGGAGAACCCTGTTTATGATTACAAATTTGTCAACAATGAAAATGAAGTGTATTACATGTATACTCTCAAGAATAGTTCTGTGATTTCTATAGTTGTTATGAACCAAACTCTTTCTCTTCGTCAACGCCTCATATGGATTCCTCAATCCAAAACTTGGACGGTTTACCAATCCTTGCCACAAGACAGGTGTGATAGTTATAATGTTTGTGGTGCAAATGGAAATTGCAACATTGATGGATCCCCAATGTGTCATTGTTTAGATGGGTTCCAGCCAAAATCACCCCACCAGTGGAATACCATGGACTGGTCACAAGGATGTGTGCGTAGTGAAAAGTGGAGCTGCAGGGTCGAAAACAGAGATGGTTTTCGTAGAGTTGGTGGGATGAAATTGCCTGATACTAGTAATTCTTGGGTTAATGTAAATATGACACTGGAGGATTGCAAGGCCAAATGCTTGGAAAATTGCTCATGCACAGCTTATGCAAGATCAGACCCAAGTACCGGAGCGGGTAGGGGTTGTTCCATCTGGTTTGGTGATCTTCTTGATTTGAGAGTTTCACAAAGTGGGCAAGATCTATATGTTCGAGTGGACATTTCAGGTGATAAACATAGGCAAAGGAAAAAAATAATCTTGGCGGTTACAATCACAGTCTCAGCGGCCCTTATGACACTATTGACACTCGCCTACATTTACATAACCAAAACAAAGTATAAAGATCCAATTCAAAGTAAATTGTTAGATTGGTCCATGCGCTTCAACATCTTGTATGGTATTGCTCGGGGTCTTCAATATCTTCATCAAGATTCCAGATTAAGGATCATACACAGAGATCTAAAAGCAAGTAACATTTTATTAGACAATAATATGAACCCAAAAATTTCAGATTTTGGCATGGCCAAAATGTGTGGAGGTGATCAAATTGAAGGAAAAACAAACAGAATAGTCGGGACATATGGTTATATGTCACCCGAATATGCCATTGATGGATTGTTCTCTATAAAATTGGATGTATTTAGCTTTGGTGTATTATTGCTCGAAATTGTAAGTGGGAAGAAAAATAGGTCACTTTCCTACCACGACAATGATCTTAATCTTATTGGGCATGCATGGAGATTGTGGAAAGAGGGCATTCCAGACAAATTGATTGACGATTGTTTGAGGGATTCGTTTAATCTATCGGAAGCTCTACGCTGCATTCAAATTGGTCTTTTATGTGTGGAACATCATCCTGATGATAGGCCAAACATGACATCCGTGGTTGTCATGTTGAGCAGTGAAAATTCTTTACCTCAACCAAAGGAACCTGGTTTCTTTATTAGAAATGTCTCAAATGGAGGAGACCATTTTAACGAAGGACAAAAATCTTCTTCAATGAATGAAGTAACTATCTCACTATTAAACGCTCGATAA 2100 0.4014 MAILLALLITISKLLLLFSQISSATDTITQSEPLPDGSTLVSKDGTFELGFFTPGSSSNRYVGIWYKNIPVRIVVWVANRDSPVKNNSSRLIISQEGNLVLLTQNQSIVWSTNATTNASSPVVQLLDSGNLVVRDEKKKNNNNNEESFLWQGFDHPCDTLLPGMKFGWDRKTGLIRRLTAWKSWDDPSSGDFTTAMVHTNPEMVVWKGSTKYYRTGPWTGVKYSGVLGLKENPVYDYKFVNNENEVYYMYTLKNSSVISIVVMNQTLSLRQRLIWIPQSKTWTVYQSLPQDRCDSYNVCGANGNCNIDGSPMCHCLDGFQPKSPHQWNTMDWSQGCVRSEKWSCRVENRDGFRRVGGMKLPDTSNSWVNVNMTLEDCKAKCLENCSCTAYARSDPSTGAGRGCSIWFGDLLDLRVSQSGQDLYVRVDISGDKHRQRKKIILAVTITVSAALMTLLTLAYIYITKTKYKDPIQSKLLDWSMRFNILYGIARGLQYLHQDSRLRIIHRDLKASNILLDNNMNPKISDFGMAKMCGGDQIEGKTNRIVGTYGYMSPEYAIDGLFSIKLDVFSFGVLLLEIVSGKKNRSLSYHDNDLNLIGHAWRLWKEGIPDKLIDDCLRDSFNLSEALRCIQIGLLCVEHHPDDRPNMTSVVVMLSSENSLPQPKEPGFFIRNVSNGGDHFNEGQKSSSMNEVTISLLNAR. 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05029 699 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 153 - -
Seca3g05029 699 CDD B_lectin 31 156 IPR001480 -
Seca3g05029 699 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Seca3g05029 699 SMART blect_4 31 156 IPR001480 -
Seca3g05029 699 SUPERFAMILY Protein kinase-like (PK-like) 471 680 IPR011009 -
Seca3g05029 699 CDD PAN_AP_plant 343 426 - -
Seca3g05029 699 SMART serkin_6 416 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05029 699 ProSiteProfiles EGF-like domain profile. 289 325 IPR000742 -
Seca3g05029 699 Gene3D - 19 152 IPR036426 -
Seca3g05029 699 ProSiteProfiles Protein kinase domain profile. 344 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05029 699 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 461 661 - -
Seca3g05029 699 Pfam S-locus glycoprotein domain 213 323 IPR000858 GO:0048544
Seca3g05029 699 SMART ntp_6 347 426 IPR003609 -
Seca3g05029 699 Pfam Domain of unknown function (DUF3403) 654 699 IPR021820 GO:0004674
Seca3g05029 699 PIRSF SRK 1 473 IPR024171 GO:0004674
Seca3g05029 699 PIRSF SRK 468 699 IPR024171 GO:0004674
Seca3g05029 699 Pfam Protein kinase domain 459 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05029 699 Gene3D Transferase(Phosphotransferase) domain 1 462 664 - -
Seca3g05029 699 Pfam D-mannose binding lectin 74 182 IPR001480 -
Seca3g05029 699 Pfam PAN-like domain 344 413 IPR003609 -
Seca3g05029 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Seca3g05029 699 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 466 - -
Seca3g05029 699 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 187 IPR036426 -
Seca3g05029 699 ProSiteProfiles PAN/Apple domain profile. 344 427 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05029 Seca-Chr3 98296472 98303065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05029 469 695 Receptor kinase-like Gene Family AT4G23150 54.825 5.95e-77 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05029 Pkinase 4.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05029 - - lja:Lj0g3v0112879.1 669.848