Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05028 ATGGTCACTCTTCCTGCTATGCTTGTTATTTCCAAGCTGCTACTGTTCTTCTCTCTAATTACCTCTGCAACTGATACAATAACCAAGTTTGAACCACTTCCTGATGGCAGCACCTTGGTTTCTAAGGATGGAACCTTTGAGTTGGGTTTCTTCAATCCTGGTAGTTCCTCAAATCGACATGTAGGAATCTGGTACAAAATTATCCCAGTTAGAACAGTCGTTTGGGTTGCCAACCGTGACAATCCAATCAAAGACAACTCAAGCAAGTTGATCATAAGCCAAGAGGGAAACCTTGTGCTTCTCAACCAGGACCAGTCTCTACTCTGGTCAACAAACGCAACAAAAAAGGCTTCAAGTCCCATTGTGCAGCTCTTGGACAATGGAAATTTAGTACTTAGAGATGAGAAGGACAACAACAATGAAGAAAGTTATCTGTGGCAGAGTTTTGACTATCCTTCTGATACATTATTGGCTGGAATGAAGTTGGGATGGGACCTAAAGAGAGGTCTTGATAGGCGTCTTACTGCTTGGAAGAATTGGGACGATCCCTCTCCAGGAGACTTTACTTTTAGTGTGGTGCTTGGCAACAATCCTGAGATTGTACTGTGGAAAGCCTCCACTGAGTACTACAGGACTGGACCATGGACTGGCGATGGGTTCAGTGGAATATTAGGGGCGAAGACTAACCCACTTTATGATTACAAATTTGTCAACAATAAAGATGAAGTGTATTTTATATACACCCTCAAGAATAGTTCTGTGATTACAATAATGGTCATGAACCAAACCCTTTATCTTCGTCAACGCCTAACTTGGATTCCTGATACCAAAACTTGGGCTGTATACCAATCCTTGCCTAAAGACAGTTGTGATGTTTATAATGTTTGTGGCGCTTATGGAAATTGCGTCATTGATGGATCCCCAATGTGTGAATGTTTAGAAGGATTTGAGCCAAAATCACCCCAGCAGTGGAATGCAATGGACTGGAGACAAGGATGTGTGCGCAGTGAACCTTGGAGTTGCAGAGTAAAAAACAAAGATGGTTTTCGAAGATTTGCTGGAATGAAAGTACCGAATACTACACATTCTTGGGTTAATGAAAATATGACGTTGGAGGATTGCAAGGCCAAGTGCTTGGAAAATTGTTCATGCACAGGTTATGCAAAAACTGACCTGAGGGGAGAAGGTAGTGGCTGTGCCATCTGGTTCGGCGATCTTGTGGACTTGAGACTTACACAAAGCAAGCAAGATTTATATGTTCGAATGGCTGCTTCAGATATGGATGCTAAACATGGACATCAGAAAACGGTAGTTTTGGTGGTTCTAATTACAGTTTCATTGGTCCTTGTGATGCTATTGGCATTTTCCTATATTTACATGAAAAAACGAAAGCATAAAGCGAAAATAGAGAAAACCATACCACCAGAAGATTTGGAGCTTCCTTTCTTTGATCTTGCTACAATAGTTAATGCCACCAATAACTTCTCAATTAACAATAAGCTCGGTGAAGGTGGTTTTGGACCTGTATACAAGGGTACATTGTTGGATGGAAGAGAGATTGCAGTCAAAAGGCTTTCAAGAAGTTCTGGCCAAGGATTGAATGAATTTAAGAATGAAGTTGTATTATGTGCCAAACTTCAACACCGAAATCTTGTTAAGGTTCTTGGTTGTTGCATTGAAGGAGAGGAGAAAATGCTACTCTATTAA 1707 0.4101 MVTLPAMLVISKLLLFFSLITSATDTITKFEPLPDGSTLVSKDGTFELGFFNPGSSSNRHVGIWYKIIPVRTVVWVANRDNPIKDNSSKLIISQEGNLVLLNQDQSLLWSTNATKKASSPIVQLLDNGNLVLRDEKDNNNEESYLWQSFDYPSDTLLAGMKLGWDLKRGLDRRLTAWKNWDDPSPGDFTFSVVLGNNPEIVLWKASTEYYRTGPWTGDGFSGILGAKTNPLYDYKFVNNKDEVYFIYTLKNSSVITIMVMNQTLYLRQRLTWIPDTKTWAVYQSLPKDSCDVYNVCGAYGNCVIDGSPMCECLEGFEPKSPQQWNAMDWRQGCVRSEPWSCRVKNKDGFRRFAGMKVPNTTHSWVNENMTLEDCKAKCLENCSCTGYAKTDLRGEGSGCAIWFGDLVDLRLTQSKQDLYVRMAASDMDAKHGHQKTVVLVVLITVSLVLVMLLAFSYIYMKKRKHKAKIEKTIPPEDLELPFFDLATIVNATNNFSINNKLGEGGFGPVYKGTLLDGREIAVKRLSRSSGQGLNEFKNEVVLCAKLQHRNLVKVLGCCIEGEEKMLLY. 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05028 568 CDD B_lectin 31 152 IPR001480 -
Seca3g05028 568 Pfam S-locus glycoprotein domain 210 320 IPR000858 GO:0048544
Seca3g05028 568 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Seca3g05028 568 SUPERFAMILY Protein kinase-like (PK-like) 480 567 IPR011009 -
Seca3g05028 568 ProSiteProfiles Protein kinase domain profile. 495 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05028 568 Gene3D Hepatocyte Growth Factor 340 424 - -
Seca3g05028 568 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 568 - -
Seca3g05028 568 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 149 - -
Seca3g05028 568 CDD PAN_AP_plant 340 423 - -
Seca3g05028 568 Gene3D Phosphorylase Kinase; domain 1 455 568 - -
Seca3g05028 568 Pfam PAN-like domain 341 409 IPR003609 -
Seca3g05028 568 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 459 568 - -
Seca3g05028 568 SMART ntp_6 344 422 IPR003609 -
Seca3g05028 568 SMART blect_4 30 152 IPR001480 -
Seca3g05028 568 ProSiteProfiles PAN/Apple domain profile. 341 423 IPR003609 -
Seca3g05028 568 Pfam D-mannose binding lectin 72 178 IPR001480 -
Seca3g05028 568 Gene3D - 17 149 IPR036426 -
Seca3g05028 568 Pfam Protein tyrosine and serine/threonine kinase 496 566 IPR001245 GO:0004672|GO:0006468
Seca3g05028 568 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Seca3g05028 568 ProSiteProfiles EGF-like domain profile. 286 322 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05028 Seca-Chr3 98280540 98283329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05028 432 568 Receptor kinase-like Gene Family AT4G23190 46.043 5.51e-33 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05028 S_locus_glycop 4.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05028 - - gmx:100790436 858.211