Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05027 ATGATAATCTTTCCAGATTCGGTTCAAAGTAAATTACTAGATTGGTCTATGCGCTTTAACATCTTAAATGGAATTGCTCGGGGGCTTCTTTATCTTCATCAAGATTCTAGATTAAGGATCATACATAGAGATTTAAAAGTGAGTAATATTTTATTAGACAATGATATGAATCCAAAAGTTTCAGATTTTGGCATGGCTAGAATGTGTGGAGGTGATCAAATTGAAGGGAAAACAAGTAGAATAGTTGGCACATATGGTTATATGGCACCTGAATATGCCATTGATGGATTGTTCTCTATAAAATCAGATGTATTTAGCTTTGGCGTATTATTGCTAGAAATTATAAGCGGAAAGAAAAACAGAGCACTTACCCACCAAGACCATGGTCTCAATCTTATTGATCACGCATGGAGATTACGGAGAGAAGGCATTCCACATGAATTGATTGATGAGTTTTTGAGGGACACATGTATTCTATCTGAAGCTCTACGGTGCATTCAAATTGGTCTTTTATGTCTTCAACATCACCCTGATGATAGGCCAAGTATGACAACTGTGGTTGTTATGTTAAGTAGTGAAAATGTTTTACCTCAACCAAAGGAACCCAACTTCTTAATTAAAAAGTTGTCAATTGAAGGAGAACATTCTTCTGGAAAGGAAACATCTTCATCAGTAAATGAAGTAACTATATCACTATTAAACGCCAGATAG 711 0.353 MIIFPDSVQSKLLDWSMRFNILNGIARGLLYLHQDSRLRIIHRDLKVSNILLDNDMNPKVSDFGMARMCGGDQIEGKTSRIVGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLEIISGKKNRALTHQDHGLNLIDHAWRLRREGIPHELIDEFLRDTCILSEALRCIQIGLLCLQHHPDDRPSMTTVVVMLSSENVLPQPKEPNFLIKKLSIEGEHSSGKETSSSVNEVTISLLNAR. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05027 236 SMART serkin_6 7 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05027 236 Gene3D Transferase(Phosphotransferase) domain 1 6 202 - -
Seca3g05027 236 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 198 - -
Seca3g05027 236 Pfam Domain of unknown function (DUF3403) 191 236 IPR021820 GO:0004674
Seca3g05027 236 Pfam Protein kinase domain 20 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05027 236 ProSiteProfiles Protein kinase domain profile. 1 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05027 236 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 234 - -
Seca3g05027 236 ProSitePatterns Serine/Threonine protein kinases active-site signature. 40 52 IPR008271 GO:0004672|GO:0006468
Seca3g05027 236 SUPERFAMILY Protein kinase-like (PK-like) 9 200 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05027 Seca-Chr3 98279464 98280409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05027 6 232 Receptor kinase-like Gene Family AT4G23150 54.825 2.74e-85 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05027 Pkinase 4.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05027 - - tpra:123915292 368.622