Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05025 ATGGCTATTCTTCCTGCTTTGCTTATTTTCTCCAAGCTACTGTTGTTATTCTCTCAAATTTCCTCTGCCACTGATACCATTACCCAGCTTCAGTCTCTTCCTGATGGTAGCACCTTGGTGTCTAAAGATGGAGCCTTTGAGTTGGGTTTCTTCAATCCGAGTAGATCCCCAAATCGCTATGTAGGAATCTGGTACAAAAACATCCCAGATAAAAGATTTGTTTGGGTTGCCAACCGTGACAAACCAATCAAAGACAACTCCAGCAAGTTGATCATAAACCAAGAGGGAAACCTTGTGCTTCTCAACCAGAACCAATCTCTACTCTGGTCAACAAACGCAACAGCAAAGACTTCGAATCCTATTGTGCAGCTCTTGGATAGTGGAAATTTAGTACTTAGAGAAGAGAACGATAACAGCAATGAAGAAAATTATCTGTGGCAGAGCTTTGATCATCCTTGTGATACATTATTACCAGGAATGAAGTTTGGATGGGATCGGAAAACTGGTCTTAATAGGCGTCTCGTTGCTTGGAAAAGTTGGGATGACCCATCTTCTGGAGACGTTACTTCGAGTGTAGTGCTTACCAATAATCCTGAAAGCTTTATTTGGAAAGGCTCAGATAAGGAATACAGGACAGGACCTTACAGTGGTCCTCAGACTACTGGACAAGTTGGATTTGAGCCTAACTCACTTTACGATTACAGATATTTCAAAAATAAAGACCAAGTGTATTTTATTTTCAATAGCTCAAAGATTACTATAAGTGTTTTGAACGGAACGCTTGTAAGTCGTCAACGCCTTGTATGGATTCCTGAAATCAACAGTTGGAGTCTTTACCTGTCCGCGCCACAAGACAACTGTGATACGTACAATGGTTGCGGTGCCAATGGAAATTGCATAATTGAGAGATCGCCAAGGTGTCAATGTTTAGATGGCTTCGAGCCAAAATCACCTCAGCGGTGGAATGCAATGGATTGGGGACAAGGATGTGTGCGTAGTGGAAATTGGAGCTGCGGGGTCAAAAACAGAGATGGTTTTCATAAATTTGAAGGGATGAAATTGCCAGACACTAATAATTCTTGGGTTGATGAAGATATGACACTGGAGGATTGCAAGGCCAAATGCTTGGAAAATTGTTCATGCACTGCTTATGCAAGCTTAGACACAAGTACTGGAGCGGGCAGGGGTTGTTCCATCTGGTTTGGTGATCTTCTTGATTTGAGAGTTTCACCAAACGGCCAAGATCTATACGTTCGAGTGGACGGTTCAGCAGAAGAAAAACATGGACATACGAAAAAGGTAGTCTTGGCTATTGCAATTACAATTCCAGTGCTCCTTGTGATGCTATTGATCATATTCTCCTACATTTACACGACCAAAACAAAGCATGAAGGAATGAAAGAGGAAACGGAGAAAACCACACCGATAGAAGATTTGGAGCTTCCTTTCTTTGATTTTCCTACCATGGTTAATGCCACCAATAACTTCTCCGTTGAAAATAAGCTTGGTGAAGGAGGTTTTGGGCCTGTATACAAGGGTAAATTGTTAGATGGACAAGAGATTGCAATCAAAAGACTTTCAAGGAGTTCTGGACAAGGGTTGAAAGAATTTAAGAATGAAGTTATATTGTGTGCTAAACTTCAACACCGAAATCTTGTTAAGGTTCTTGGTTGTTGCATTGAAGGAGAGGAGAAAATGCTACTTTACGAATACATGCCCAACAAAAGTCTCGATTCATTTATTTTCGATTCGGCTCAAAGTAAACTTCTAGATTGGTCTACACGCTTTAACATCTTATATGGAATTGCTCGAGGGCTTCTTTATCTTCATCAGGATTCTAGATTAAGGATCATACACAGAGATTTAAAAGCAAGTAATATCTTATTAGACGATAATATGAATCCAAAAATTTCAGATTTTGGCATGGCAAGGATGTGTGGAGGTGATCAAATTGAAGGGAATACAAGGAGAATAGTTGGGACATACGGTTATATGGCCCCTGAATATGCCATTGATGGATTGTTCTCTATAAAATCAGATGTTTTCAGCTTTGGAGTATTATTGTTGGAGATTGTAAGCGGAAAGAAAAATAGAGCACTTACTTACCATGACTATACTCAAAATCTTATTGGGCATGCATGGAGATTGTGGAAAAATGGTATTGCAGAAGAATTGATTGATACTTGTTTGGGGGATTCATGTATTCTATCTGAAGCATTACGTTGCATTCAAATTGGTCTTTTATGTCTGCAACATCATCCTGATGATAGGCCAAACATGACATCTGTGGTTATAATGTTGAGTAGCGAAAATGCTTTACCTCAACCAGAGGAACCTGGTTTCTTAATTAGAAAGGTATCAGTTAAAGGAGAATGTTCTTCGGAAAGACAAACATCTTCTTCAGTCAATGAAGTAACTATCTCAATATTAAATGCTAGGTAA 2442 0.3956 MAILPALLIFSKLLLLFSQISSATDTITQLQSLPDGSTLVSKDGAFELGFFNPSRSPNRYVGIWYKNIPDKRFVWVANRDKPIKDNSSKLIINQEGNLVLLNQNQSLLWSTNATAKTSNPIVQLLDSGNLVLREENDNSNEENYLWQSFDHPCDTLLPGMKFGWDRKTGLNRRLVAWKSWDDPSSGDVTSSVVLTNNPESFIWKGSDKEYRTGPYSGPQTTGQVGFEPNSLYDYRYFKNKDQVYFIFNSSKITISVLNGTLVSRQRLVWIPEINSWSLYLSAPQDNCDTYNGCGANGNCIIERSPRCQCLDGFEPKSPQRWNAMDWGQGCVRSGNWSCGVKNRDGFHKFEGMKLPDTNNSWVDEDMTLEDCKAKCLENCSCTAYASLDTSTGAGRGCSIWFGDLLDLRVSPNGQDLYVRVDGSAEEKHGHTKKVVLAIAITIPVLLVMLLIIFSYIYTTKTKHEGMKEETEKTTPIEDLELPFFDFPTMVNATNNFSVENKLGEGGFGPVYKGKLLDGQEIAIKRLSRSSGQGLKEFKNEVILCAKLQHRNLVKVLGCCIEGEEKMLLYEYMPNKSLDSFIFDSAQSKLLDWSTRFNILYGIARGLLYLHQDSRLRIIHRDLKASNILLDDNMNPKISDFGMARMCGGDQIEGNTRRIVGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLEIVSGKKNRALTYHDYTQNLIGHAWRLWKNGIAEELIDTCLGDSCILSEALRCIQIGLLCLQHHPDDRPNMTSVVIMLSSENALPQPEEPGFLIRKVSVKGECSSERQTSSSVNEVTISILNAR. 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05025 813 Pfam PAN-like domain 338 407 IPR003609 -
Seca3g05025 813 ProSiteProfiles PAN/Apple domain profile. 338 421 IPR003609 -
Seca3g05025 813 Gene3D Hepatocyte Growth Factor 337 417 - -
Seca3g05025 813 ProSiteProfiles Protein kinase domain profile. 496 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05025 813 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Seca3g05025 813 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 758 - -
Seca3g05025 813 Pfam D-mannose binding lectin 73 178 IPR001480 -
Seca3g05025 813 CDD PAN_AP_plant 337 420 - -
Seca3g05025 813 SMART blect_4 30 152 IPR001480 -
Seca3g05025 813 SUPERFAMILY Protein kinase-like (PK-like) 481 776 IPR011009 -
Seca3g05025 813 ProSiteProfiles EGF-like domain profile. 283 319 IPR000742 -
Seca3g05025 813 SMART serkin_6 496 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05025 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 149 - -
Seca3g05025 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 572 775 - -
Seca3g05025 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Seca3g05025 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 459 571 - -
Seca3g05025 813 CDD STKc_IRAK 502 767 - -
Seca3g05025 813 PIRSF SRK 1 813 IPR024171 GO:0004674
Seca3g05025 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Seca3g05025 813 CDD B_lectin 31 152 IPR001480 -
Seca3g05025 813 Gene3D Phosphorylase Kinase; domain 1 470 571 - -
Seca3g05025 813 Gene3D - 18 149 IPR036426 -
Seca3g05025 813 Gene3D Transferase(Phosphotransferase) domain 1 572 777 - -
Seca3g05025 813 Pfam Domain of unknown function (DUF3403) 768 813 IPR021820 GO:0004674
Seca3g05025 813 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Seca3g05025 813 Pfam Protein tyrosine and serine/threonine kinase 498 764 IPR001245 GO:0004672|GO:0006468
Seca3g05025 813 SMART ntp_6 341 420 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05025 Seca-Chr3 98146403 98152112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05025 435 784 Receptor kinase-like Gene Family AT4G23230 55.241 3.52e-130 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05025 PK_Tyr_Ser-Thr 4.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05025 - - gmx:100790436 1172.15