Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05023 ATGTATTGGGGACAAGGATGTGTGCGTAGTGGAAATTGGAGCTTCGGGGTCAAAAACAGAGATGGTTTTCATAAATTTGAAGGGATGAAATTGCCTGATACTAATAATTCTTGGATTGATGAAAATATGACACTGGAGGATTGCAAGACCAAATGCTTGGAAAATTGTTCATGCACAGCTTATGCAAGCTTAGACCCAAGTGGAGCGGGTAGGGGTTGTTCCATCTGGTCAGGTGATCTTCTTGATTTGAGAGTTTCACAAAGCGGCCAAGATCTTTATGTTCGAACGGCTTTAGAAACGGATGATAAACATGGGAAAATGAAAAAGGATATATTGCAAGAGGAACAAGAGATTGCAGTCAAAAGACTTTCAGGGAGTTCTAGACAAGGATCACTAGAATTTAAAAATGAAGTTATATTATGTGCTAAACTTCAACATAGAAATCTTGTTAAGGTTCTTGCTTGTTCCATTGAAGGAGAGGAGAAAATGCTACTCTATGAATACATGCCCAACAAAAGCCTTGATTCATTTCTTTTCGATTCGGTCCAAAGTAGATTACTAGATTGGCCTATGCGCTTTAACATTTTGTATGGAATTGCCCGGGGGCTTCTTTATCTTCATCAAGATTCTAGATTAAGGATCATACATAGAGATTTGAAAGCAAGTAACATTTTATTAGACAATAATATGAATCCAAAAATTTCGGATTTTGGCATGGCCAGAATGCGCGGAGGTGATCAAATTGAAGGGAAAACTAATAGAATAGTTGGGACATACGGTTATATGGCACCTGAATATGCCATTGATGGATTATTCTCTATAAAATCAGATGTATTTAGCTATGGTGTATTGTTGCTAGAAATTGTAAGTGGGAAGAAAAATAAGGCACTTACCTACCACGAAAATGATCTCAATCTTATCCGGCATGCATGGAGATTGTGGAAAGAGGGCATTCCAGAGAAAATGATTGATGATTGTTTGAGGGATTCATGTATTCTACCTGAAGCTCTACGTTGCATTCAAATTGGTCTTTTATGTGTGGAACATCATCTTTGTGATAGGCCAAACATGACATCTGTGGTTGTGATGTTAAGTAGTGAAAATCCTTTACCTCAACCAAAGGAACCTGGTTTCTTCATTATAAATTTCTCAAATGAAGGAGACAATTCTAACAAAGGACAAAAATCTTTTTCAATGAATGAAGTAACCATCTCACTATTAAACGCTCGATAA 1233 0.3706 MYWGQGCVRSGNWSFGVKNRDGFHKFEGMKLPDTNNSWIDENMTLEDCKTKCLENCSCTAYASLDPSGAGRGCSIWSGDLLDLRVSQSGQDLYVRTALETDDKHGKMKKDILQEEQEIAVKRLSGSSRQGSLEFKNEVILCAKLQHRNLVKVLACSIEGEEKMLLYEYMPNKSLDSFLFDSVQSRLLDWPMRFNILYGIARGLLYLHQDSRLRIIHRDLKASNILLDNNMNPKISDFGMARMRGGDQIEGKTNRIVGTYGYMAPEYAIDGLFSIKSDVFSYGVLLLEIVSGKKNKALTYHENDLNLIRHAWRLWKEGIPEKMIDDCLRDSCILPEALRCIQIGLLCVEHHLCDRPNMTSVVVMLSSENPLPQPKEPGFFIINFSNEGDNSNKGQKSFSMNEVTISLLNAR. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05023 410 CDD PAN_AP_plant 18 97 - -
Seca3g05023 410 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 111 389 - -
Seca3g05023 410 SUPERFAMILY Protein kinase-like (PK-like) 113 393 IPR011009 -
Seca3g05023 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Seca3g05023 410 SMART ntp_6 18 96 IPR003609 -
Seca3g05023 410 Pfam Protein tyrosine and serine/threonine kinase 105 313 IPR001245 GO:0004672|GO:0006468
Seca3g05023 410 SMART serkin_6 61 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05023 410 Gene3D Transferase(Phosphotransferase) domain 1 169 372 - -
Seca3g05023 410 Gene3D Hepatocyte Growth Factor 14 97 - -
Seca3g05023 410 ProSiteProfiles PAN/Apple domain profile. 7 97 IPR003609 -
Seca3g05023 410 ProSiteProfiles Protein kinase domain profile. 61 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05023 410 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 169 372 - -
Seca3g05023 410 Gene3D Phosphorylase Kinase; domain 1 98 168 - -
Seca3g05023 410 Pfam PAN-like domain 18 83 IPR003609 -
Seca3g05023 410 Pfam Domain of unknown function (DUF3403) 365 410 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05023 Seca-Chr3 98130480 98133872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05023 81 406 Receptor kinase-like Gene Family AT4G23150 51.070 5.13e-111 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05023 PK_Tyr_Ser-Thr 1.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05023 - - cic:CICLE_v10010282mg 471.085