Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05022 ATGTCGTGCATTACTCCAGCTCTGTCGTTGCGCACCACTGCTCCTGCACCGTGCGCCACTGCCGTTCATAGTCTATCGTTGTTAGCCATCGTCCGCCGCGCCAGTGAAGAAGTCAACACATCTCTTTGGAAGAAGACAGTAGTTGTGTCCTTGTTGAATAAGCTTGCAACTAACATAGGACAAGAGTTATTGGACATTGATGATAAATCTCTAGTAGCTGCAATCAAATCCCTTAGTGTTGGAGAATTTCAAGGTATTCTAAGTGTTTTAGAGAAAGAGGAAATTGAGAGTGACAAGAGTAAGCAACAAGGCACGAGCAAGGAGCCAAAGAGAAGAATGAAGCCTAAAGCTTTATTTGTTGTTGCAAAAAGGACCCTAATCACTACACAGGGCAAGGTAAGAGACATCCTTTTACCTGGAATGCTGGTGGCATTCTCACTCAGGTACGATAGGCTTGCCAATAAAACCCTTCGAAGTGGATACTTCTTGTGGGCAATTTTTGCCTATGGCATTGGTACATTCTTAACTTTTTCCGAATTTTTGTATGTATTCTAA 555 0.4288 MSCITPALSLRTTAPAPCATAVHSLSLLAIVRRASEEVNTSLWKKTVVVSLLNKLATNIGQELLDIDDKSLVAAIKSLSVGEFQGILSVLEKEEIESDKSKQQGTSKEPKRRMKPKALFVVAKRTLITTQGKVRDILLPGMLVAFSLRYDRLANKTLRSGYFLWAIFAYGIGTFLTFSEFLYVF. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05022 184 Pfam Signal peptide peptidase 135 177 IPR007369 GO:0004190|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05022 Seca-Chr3 98112798 98116140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05022 44 95 Core DNA Replication Machinery Family AT5G61000 62.264 2.14e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05022 K09597 - cave:132176061 76.2553