Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05021 ATGGCCATTTTAACTTTTTCGTTTGTTTTTGCCAAACTACTTATACTGTTTCCTCCATTTTCGTCTGCAAATGATTCTTTTAGCAGATCGCAGTCACTTCCTGATGGCAGAACCTTGGTGTCCAAAGATGGAACCTTTGAAATGGGTTTCTTCAGTCCAGGCAATAACAACACAAACCGTTACCTTGGAATCTGGTACAATAGGATCCCAGTTAGAACTGTTGTTTGGGTTGCAAACCGTGATAACCCAGTCAAAGACAACTCCAGCAAGTTGACCATAAACACAGAGGGAAAGCTTGTGATCCTAAGCAAGAACGAAACTCTTGTTTGGTCAGCAAACTCAACAGCACAGCCACAGGTACAGAGTCCAATTGTGCAGCTTTTAGACTCAGGAAACTTAGTACTAAGAGATGAGAAAGACCAAAATCCCCAAAACTATTTGTGGCAGAGTTTTGACTATCCTTGTGATACATTTTTGGCTGGAATGAAGATTGGATGGAACCTGAAAACGGGTCTTAATCGTTATTTATCAGCATGGAAGAATTGGGATGACCCTTCTCCAGGGGATCTCAGATGGGGTCTTGTACTTGGCAACACCCCTGAATTGGTTATGTGGAAGGGCTCCACTGAGTACTATAGGAGTGGCCCTTGGAATGGTGTTAGATTCAATGGTAAAACCACTTCCCTTTTCAACTTAGAACTTGTGACCACTGATGATGAGGTGTTTTACACTTACAATCTCATGAATAAGTCAGTGATTACAAGAGTTGTTCTGAACCAATCACTTTATTCTCGTCAGCGTTACAATTGGATTGAGGAAAACCAAACTTGGAGGCTTTATTCATCAGTGCCACGAGACAATTGTGACAATTATAATGTTTGTGGTGCATATGGGAATTGTATCGTGAGTGAATCACCACCATGCCAGTGTCTAACAGGGTTTAGGCCAAAATCACCCCAAAATTATGAGGCATTGGACTGGACACAAGGATGTGTACTTAGTGAACCGTGGAGTTGTAGGGTGAAAAACCAAGATGGTTTTAAAATGTTTAGTGGGTTGAAAATGCCAGATACTACAAAGTCTTGGGTTAATGGAAACTTGACACTTGAGAATTGCAGAGCTAAATGCTTAGAAAACTGTTCTTGCACAGCCTACGCAAACTTGGACATCAGGGGAGAAGGTAATGGTTGTATCATTTGGTTTGGAGCTCTAATTGATATAAGGGTGGCTTCAGTTCCTGGACAAGATCTATATATTCGAATGGCTGCTTCAGAAACTGGTATGGTCTTTAATCATGCTATCGGTGAAGATGCAAAGGGAGGGCATAAGAAAATTGTGGCAGTGGCAATTTCAGTTGCCCTTATCTTGGTTATTGTGATTGTTTTCACTTTCACTTACATATACCGGAGAAAAAGAAAGCTTAGAAGAACTGCAGAAAATACCTCAGAAGAAAAGAAAGAAGAAGGTCATGAAGAAGACTTGGAGCTGCCTTTCTTTGATTTTGCTACAATAGCTCATGCCACTAATGACTTCTCAAGTGATAAGAGGCTTGGCCAAGGTGGTTTTGGACCTGTGTACAGGGGTACATTAGCAGATGGACAAGATATTGCTGCCAAGAGACTTTCAAGCACTTCTGGACAGGGAATTCAAGAATTCAAGAATGAAGTTGTACTGTGTGCCAAACTTCAGCACAGAAATCTTGTTAAGGTTCTGGGTTGTTCCACCCAAGGAGACGAGAAAGTGCTCATCTATGAATACATGCCTAATAAAAGCCTAGATTCCTTTCTCTTTGATTCTTCTCAAAGTGGACTCCTAAATTGGTCTAAGCGCTTTAACATTATATTTGGAATTGCTCGGGGACTTCTTTATCTTCATCAAGATTCAAGATTAAGAATCATTCATAGAGATCTTAAAGCGAGTAATATTCTACTAGATGGCGAGTTAAATCCAAAAATTTCAGATTTTGGAGTGGCACGAATGTTTAGTGGAAATCAAACAGAAGCGAATACAAAAATGGTAGCTGGAACATATGGGTACATGGCACCAGAATATGCAATTGATGGGCTATTTTCCATCAAATCTGATGTATTTAGCTTTGGTGTGTTACTACTGGAGATAGTAAGTGGGAAGAAAAACACAAGAGTTTTCTTTCCAAATAATGGATTTAATCTTTTAGGACATGCATGGAGATTATGGAAAGAGAACACTCCAATGAAATTAATTGATGCTTTTTTGGGTGACTCATTTTCCATATCAGAAGTACTAAGATGCATCCATGTTGGTCTTCTATGTGTGCAGCTGCATCCAGAGGATAGGCCAAACATGGCAACAGTGATTTTGATGTTAAGCAGTGAAAATACTCTGCCACAGCCTAAGGAGCCTGGTTTCCTTATTGAAAGGATGTCAATTGTTGGAGAATCTTCGTCTAGCAATCAGATTAATTCTTCGACTAATGAATTAACTATGACACTGTTAGAACCTAGATAG 2487 0.3993 MAILTFSFVFAKLLILFPPFSSANDSFSRSQSLPDGRTLVSKDGTFEMGFFSPGNNNTNRYLGIWYNRIPVRTVVWVANRDNPVKDNSSKLTINTEGKLVILSKNETLVWSANSTAQPQVQSPIVQLLDSGNLVLRDEKDQNPQNYLWQSFDYPCDTFLAGMKIGWNLKTGLNRYLSAWKNWDDPSPGDLRWGLVLGNTPELVMWKGSTEYYRSGPWNGVRFNGKTTSLFNLELVTTDDEVFYTYNLMNKSVITRVVLNQSLYSRQRYNWIEENQTWRLYSSVPRDNCDNYNVCGAYGNCIVSESPPCQCLTGFRPKSPQNYEALDWTQGCVLSEPWSCRVKNQDGFKMFSGLKMPDTTKSWVNGNLTLENCRAKCLENCSCTAYANLDIRGEGNGCIIWFGALIDIRVASVPGQDLYIRMAASETGMVFNHAIGEDAKGGHKKIVAVAISVALILVIVIVFTFTYIYRRKRKLRRTAENTSEEKKEEGHEEDLELPFFDFATIAHATNDFSSDKRLGQGGFGPVYRGTLADGQDIAAKRLSSTSGQGIQEFKNEVVLCAKLQHRNLVKVLGCSTQGDEKVLIYEYMPNKSLDSFLFDSSQSGLLNWSKRFNIIFGIARGLLYLHQDSRLRIIHRDLKASNILLDGELNPKISDFGVARMFSGNQTEANTKMVAGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLEIVSGKKNTRVFFPNNGFNLLGHAWRLWKENTPMKLIDAFLGDSFSISEVLRCIHVGLLCVQLHPEDRPNMATVILMLSSENTLPQPKEPGFLIERMSIVGESSSSNQINSSTNELTMTLLEPR. 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05021 828 Pfam Domain of unknown function (DUF3403) 783 828 IPR021820 GO:0004674
Seca3g05021 828 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 773 - -
Seca3g05021 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 185 IPR036426 -
Seca3g05021 828 Pfam D-mannose binding lectin 73 180 IPR001480 -
Seca3g05021 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 151 - -
Seca3g05021 828 ProSiteProfiles Protein kinase domain profile. 511 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05021 828 Gene3D - 20 151 IPR036426 -
Seca3g05021 828 ProSiteProfiles Bulb-type lectin domain profile. 24 148 IPR001480 -
Seca3g05021 828 SMART ntp_6 342 421 IPR003609 -
Seca3g05021 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Seca3g05021 828 Gene3D Phosphorylase Kinase; domain 1 471 586 - -
Seca3g05021 828 Gene3D Transferase(Phosphotransferase) domain 1 587 792 - -
Seca3g05021 828 CDD STKc_IRAK 517 782 - -
Seca3g05021 828 PIRSF SRK 1 828 IPR024171 GO:0004674
Seca3g05021 828 Pfam Protein tyrosine and serine/threonine kinase 514 716 IPR001245 GO:0004672|GO:0006468
Seca3g05021 828 CDD B_lectin 30 154 IPR001480 -
Seca3g05021 828 SUPERFAMILY Protein kinase-like (PK-like) 494 794 IPR011009 -
Seca3g05021 828 SMART serkin_6 511 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05021 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 587 790 - -
Seca3g05021 828 Coils Coil 468 491 - -
Seca3g05021 828 Pfam S-locus glycoprotein domain 212 318 IPR000858 GO:0048544
Seca3g05021 828 Gene3D Hepatocyte Growth Factor 338 415 - -
Seca3g05021 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 475 586 - -
Seca3g05021 828 Pfam PAN-like domain 339 407 IPR003609 -
Seca3g05021 828 SMART blect_4 30 154 IPR001480 -
Seca3g05021 828 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Seca3g05021 828 CDD PAN_AP_plant 338 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05021 Seca-Chr3 98107348 98110882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05021 470 828 Receptor kinase-like Gene Family AT4G11530 53.005 1.66e-129 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05021 PK_Tyr_Ser-Thr 2.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05021 - - gmx:100790436 1056.97