Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05020 ATGGATATTCATATTCTTTCTTTATTGATAATTGCTGCATGTATACTTATACCTTCTTTCAAAGTATCCATTGCACTGGATACTATTCTTCTGTCCCAGTCCATGAGTGATGGCATGACCTTGGTTTCCCAAGATGGAAAATTTAAACTTGGTTTCTTCAGTCCTGAGAATTCCAACAAACGTTACCTGGGGATTTGGTACAACAATATCCCAATTCAGACTGTTGTTTGGGTTGCAAAGGGTGCCAAAGCCATCAATGATTCCTCTGGTATCTTAACACTGAACAGCACTGGCAACCTTGTCCTCTCACAGCATGACAAGGTAATCTGGTACACAACATCTCAGAAACAAGCACAGAATCCAGTAGCACAGCTCCTGGATTCAGGGAATCTTGTTGTAAGAGATGAGAGTGAAACAAACCCAGAAGCCTATTTGTGGCAGAGCTTTGACTACCCATCTGATACACATCTGCCAGGGATGAAGTTGGGATGGAACCTCAAAACTGGTATGGAATGGAGAATGACATCTTGGAAGAGTCCTGATGATCCATCCCCAGGAGATTTTTATTGGGGTTTATTGCTTCATAATTATCCTGAGTTTTATCTGATGAAGGGAACAAAAAAGTTTGTGAGAATTGGACCATGGAATGGTCAGCATTTTAGTGGCATACCAGATCAAAAGCCCAACACCATTTATTTGACCATTTATGTGTCCAATAAGGATGAGATGTTCCTCACGCATACTCTCAAGAATGATTCTGTAATTACAAGACTGGTACTGAATCAAACCACTTCTATGAGTACTCGTTACGTGTGGATCGAAGATCAACAATATTGGCAGGTTTATAAATCACTTCCAAAAGACAATTGTGACTTTTATGGCAGTTGTGGAGCCTATGGGAGTTGCATAATTACAGGCTCCCAAATTTGCCAATGTTTACCAAAGTTCAGTCCCAAGTCACCAGAAGCATGGTACTCATCTGACTGGTCTCATGGATGTGTCCGCAATAAGCCACTGAACTGCACAGACAAACTCAAGGATGGATTTATGAAGGTGGAAGGTGTAAAAGTGCCAGAAACTTCACGTACTTGGGTAGATGAGACAATGGGTCTAGATGAATGCAGAGTCAAGTGTTTGAATAATTGTTCTTGTATGGCTTATACTAATTTTAACATAACAGGAGGGGGTAGTGGCTGTGTCATGTGGTTTGATGATCTTTTTGATATTAGACAATTTGAAAATGTTGGGCAGGATCTGTATATTCGAATGGATGCTTCAGAATTGGGTACAGAGGAACATGATGGGCGCAAGAAGGAGCTGATAGGAATAGCTGCTGCTGCTACAGCCATTTTAATTTCAGGGATGCTTTTTCTTGGTTATCGTCTCCATATCTTCCGTCGCAGCATACCTGAGGATTCAGAAAGTATAGAACGAGAAAGTGACATAGGAGGTAGCGAGGATGATCTTGACCTCCCATTGCTTGACCATTCAGTAATAGTCACCACCACTGATAACTTCTCAATAAAGAACAAGATTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGAAGATTAGTATGTGGACAAGAAATTGCTGTGAAGAGGCTTTCAAGAAGCTCTGGACAAGGAATGACTGAATTCAAGAATGAAGTAAAACTCATAGCGAAACTTCAGCACCGAAATCTTGTTAAGCTTATTGGTTGTTGCATTCAGGAAGAAGACAGAATACTGGTTTATGAATATATGACTAACCGTAGCTTGGATTGGTTCATTTTTGATGATACTAAAAGCAAATTGCTTGATTGGCCTAAACGCTTCAACATTATCTGCGGAATTGCCCGAGGTCTTCTCTACCTTCATCATGATTCTAGATTGAGGATAATTCATAGAGATCTCAAACCAAGTAATGTCTTGCTTGATGACAAGCTGAACCCCAAAATATCAGATTTTGGAATTGCTAGAATTTTTGGTGGAGATCAGATAGAAGGAAATACAAAGAGAGTAGTTGGCACTTATGGCTACATGGCACCAGAATATGCTGTTGATGGGCTATTTTCAGTGAAATCTGACGTTTTTAGTTTTGGGATTTTGTTGCTGGAGATTATATGTGGAAAGAGAAGTAGAGGTTTTTATCTTGAAAATGACTCTCCTAACCTTGTCACTCATGTAAGTATGTTTCATAATTTTTCAATTTATGTGTATCATATAAACTTGTGA 2217 0.3969 MDIHILSLLIIAACILIPSFKVSIALDTILLSQSMSDGMTLVSQDGKFKLGFFSPENSNKRYLGIWYNNIPIQTVVWVAKGAKAINDSSGILTLNSTGNLVLSQHDKVIWYTTSQKQAQNPVAQLLDSGNLVVRDESETNPEAYLWQSFDYPSDTHLPGMKLGWNLKTGMEWRMTSWKSPDDPSPGDFYWGLLLHNYPEFYLMKGTKKFVRIGPWNGQHFSGIPDQKPNTIYLTIYVSNKDEMFLTHTLKNDSVITRLVLNQTTSMSTRYVWIEDQQYWQVYKSLPKDNCDFYGSCGAYGSCIITGSQICQCLPKFSPKSPEAWYSSDWSHGCVRNKPLNCTDKLKDGFMKVEGVKVPETSRTWVDETMGLDECRVKCLNNCSCMAYTNFNITGGGSGCVMWFDDLFDIRQFENVGQDLYIRMDASELGTEEHDGRKKELIGIAAAATAILISGMLFLGYRLHIFRRSIPEDSESIERESDIGGSEDDLDLPLLDHSVIVTTTDNFSIKNKIGEGGFGPVYKGRLVCGQEIAVKRLSRSSGQGMTEFKNEVKLIAKLQHRNLVKLIGCCIQEEDRILVYEYMTNRSLDWFIFDDTKSKLLDWPKRFNIICGIARGLLYLHHDSRLRIIHRDLKPSNVLLDDKLNPKISDFGIARIFGGDQIEGNTKRVVGTYGYMAPEYAVDGLFSVKSDVFSFGILLLEIICGKRSRGFYLENDSPNLVTHVSMFHNFSIYVYHINL. 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05020 738 Pfam PAN-like domain 343 409 IPR003609 -
Seca3g05020 738 SMART serkin_6 506 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05020 738 ProSiteProfiles EGF-like domain profile. 286 322 IPR000742 -
Seca3g05020 738 SMART ntp_6 344 423 IPR003609 -
Seca3g05020 738 Pfam Protein kinase domain 507 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05020 738 SMART blect_4 32 152 IPR001480 -
Seca3g05020 738 Pfam D-mannose binding lectin 74 178 IPR001480 -
Seca3g05020 738 ProSiteProfiles PAN/Apple domain profile. 341 424 IPR003609 -
Seca3g05020 738 Gene3D - 21 149 IPR036426 -
Seca3g05020 738 Pfam S-locus glycoprotein domain 211 320 IPR000858 GO:0048544
Seca3g05020 738 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 183 IPR036426 -
Seca3g05020 738 CDD B_lectin 32 152 IPR001480 -
Seca3g05020 738 Gene3D Phosphorylase Kinase; domain 1 477 581 - -
Seca3g05020 738 Gene3D Hepatocyte Growth Factor 340 420 - -
Seca3g05020 738 PIRSF SRK 1 736 IPR024171 GO:0004674
Seca3g05020 738 SUPERFAMILY Protein kinase-like (PK-like) 492 711 IPR011009 -
Seca3g05020 738 ProSiteProfiles Protein kinase domain profile. 506 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05020 738 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Seca3g05020 738 ProSiteProfiles Bulb-type lectin domain profile. 26 146 IPR001480 -
Seca3g05020 738 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 708 - -
Seca3g05020 738 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 471 581 - -
Seca3g05020 738 Gene3D Transferase(Phosphotransferase) domain 1 582 731 - -
Seca3g05020 738 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 149 - -
Seca3g05020 738 CDD PAN_AP_plant 338 422 - -
Seca3g05020 738 FunFam Lectin-domain containing receptor kinase A4.3 582 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05020 Seca-Chr3 98064936 98068792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05020 443 723 Receptor kinase-like Gene Family AT4G23230 55.319 3.39e-97 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05020 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05020 - - gmx:100775648 1145.57