Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05018 ATGACTGAATTCAAGAATGAAGTAAAACTCATAGCGAAACTTCAGCACCGGAATCTTGTTAAGCTTATTGGTTGTTGCATTCAGGAAGACAGAATACTGGTTTATGAATACATGACTAACCGTAGCTTGGATTGGTTCATTTTTGATGATACTAAAAGCAAATTGCTAGATTGGCCTAAACGGTTCAACATTATATGTGGAATTGCTAGAGGTCTTCTCTACCTTCATCATGATTCAAGATTAAGGATAATTCATAGAGATCTCAAACCAAGTAATGTTTTACTTGATGACAAGCTTAATCCCAAAATATCAGATTTTGGCATTGCTAGAATTTTTGGAGGAGATCAGACAGAAGGAAATACAAAGAGAGTAGTTGGCACTTATGGCTACATGGCACCAGAATATGCTGTTGATGGGCTCTTTTCAGTGAAATCTGATGTTTTTAGTTTTGGGATTTTGTTGCTGGAGATTATATGTGGAAAGAGAAGTAGAGGTTTTTATCTTGAAAATGACTCTCCTAACCTTGTCACTCATGCATGGAATTTGTGGAAAGAGGGCAGGGCTTTGCAACTGATTGACCCAAACATAGAGGACCCTTGTGTTCTATCAGAGATATTGCGCTGCATCCATGTCAGTCTGTTGTGTGTGCAGCAATATCCAGAAGATAGACCTGTCATGCCTTCTGTGCTTCTAATGTTAGGGAGTGACAGTGAATTGGCTGAGCCAAAAGAGCCTGGTTACTTTGTGAAGAAGGATTCATTTGCAGCAGCTTCCAACTCAGATCGAAGTGATAAGATCTCAACAAATGAAATGACCATCACCTTATTAGAAGCCCGGTGA 840 0.3917 MTEFKNEVKLIAKLQHRNLVKLIGCCIQEDRILVYEYMTNRSLDWFIFDDTKSKLLDWPKRFNIICGIARGLLYLHHDSRLRIIHRDLKPSNVLLDDKLNPKISDFGIARIFGGDQTEGNTKRVVGTYGYMAPEYAVDGLFSVKSDVFSFGILLLEIICGKRSRGFYLENDSPNLVTHAWNLWKEGRALQLIDPNIEDPCVLSEILRCIHVSLLCVQQYPEDRPVMPSVLLMLGSDSELAEPKEPGYFVKKDSFAAASNSDRSDKISTNEMTITLLEAR. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05018 279 SUPERFAMILY Protein kinase-like (PK-like) 3 255 IPR011009 -
Seca3g05018 279 SMART serkin_6 2 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05018 279 ProSiteProfiles Protein kinase domain profile. 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05018 279 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 38 241 - -
Seca3g05018 279 ProSitePatterns Serine/Threonine protein kinases active-site signature. 83 95 IPR008271 GO:0004672|GO:0006468
Seca3g05018 279 Gene3D Transferase(Phosphotransferase) domain 1 39 247 - -
Seca3g05018 279 Gene3D Phosphorylase Kinase; domain 1 1 38 - -
Seca3g05018 279 Pfam Protein tyrosine and serine/threonine kinase 2 226 IPR001245 GO:0004672|GO:0006468
Seca3g05018 279 Pfam Domain of unknown function (DUF3403) 236 279 IPR021820 GO:0004674
Seca3g05018 279 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05018 Seca-Chr3 98015984 98017407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05018 2 251 Receptor kinase-like Gene Family AT4G23230 60.317 2.32e-109 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05018 PK_Tyr_Ser-Thr 4.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05018 - - gmx:100775648 476.863