Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05017 ATGGACATTCTTCACGCTTTGCTTGTTATTTCCAACCTACTACTATTCTTCTTCTCTCAAATTTCTTCTGCAACCGATACCATTACCCAATTTAATCCACTTATTGATGGCACCACCTTGGTTTCTAGGAATGGAACCTTTGAGTTGGGTTTCTTCAATCCCGGTAGTTCCTCAAACCGCTATGTAGGAATCTGGTACAAAAATATCCCAGATAGAAAATTTGTTTGGGTTGCCAACCGTGACAATCCAATCAAAGACAACTCCAGCAAGTTGATCATAAGCCAAGAGGGAAACCTCGTGCTTCTCAACCAGAATCAGTCTCTGCTTTGGTCAACCAATTCAACCACAAAGGCTTCAAGTCCTATTGTGCAGCTCTTAGACACTGGGAATTTAGTACTTAGAGATGAGAAGGACAACAACAATGATGAAGAGAGTTTTCTGTGGCAGAGCTTTGACTATCCTTCTGATACAATGTTGCCAGGAATGAAGATTGGATGGGATCGAAAAACTGGTATTAATCGGCGTATTACTGCTTGGAAGAATTGGGATGACCCTTCTCCAGGAGACTTTACTTGGGGCATTGTCCTTACTAGCAACCCTGAAATGGCAATGTGGAAGAACTCAATTGTGTTCTATAGGAGTGGACCCTGGAATGGCGATCGATTCAGCGGTTCACCTACAATGAGGGATAATCCTGTTTATGACTACAAGTTTGTCAACACTTCAAATGAGGTCACTTACACATACAGCCTCAAAAACAAGTCCATGATTTCAATAGTTGTCATGAATCAATCCGTTTATCTTCGTCACCGCTTCACTTGGATTCCAGCAACCAAAGCTTGGAAGCTTTACCATTCTTCACCAAGAGATATCTGTGATACTTATAATCTTTGCGGCCCAAATGGGAATTGCGTTTATGGTGAATCACCTATTTGCCAGTGTTTAGATGGATTCAAACCTAAATCTTCCCAAAATTGGGAAGCAATGGACTGGACACAAGGTTGCATGCGGAGGGAATTATGGAGTTGTAGGGTGAAAGGCAAAGATGGATTTCGTAGATTTGCTGGATTGAAATTGCCAGATACCACACATTCTTGGGTTAATGAAACCATGACACTTGATGAATGTAAGGCCAAATGCTTGGAAGATTGTTCTTGCACGGCTTATTCAAATTCAGATGTGATGGGAGGAGGTAGTGGCTGTGCCATTTGGTTTGGTGATCTTCTTAATTTGAGAATTATAGAAAGTGGTCAAGATTTATATATTCGAATGGCTTTTTCAGAGACAGACTTGACTAGTAGTGTTTCATCTCTTTGTAAAGCTGTAGATGGAGATGCAAAAGATGGGCATAAAAAAAAGGTTGCCATAGTAATTACAATCACACTTCTATTTGTCCTTGTGCTGCTTTTTGCTCTGTGCTACATTTACAAGACCAAAAGGAAGTACAGAGTAAATATAGAGAAAAACTTGCTAAGTGGAGAGAAACATGAAGAGGGACAAGAAGATTTAGAGCTTCCTTTCTTTGATCTTCCTACAATAATTAATGTCACCGATGACTTCTCAATTGATAATAAGCTTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGTATACTAGGAGATCAACAGGAGATTGCCGTGAAAAGACTATCAAGGGCTTCTCAACAAGGTTTACAAGAATTTAAGAATGAAGTTATATTGTGTGCTAAACTTCAACATCGAAATCTTGTTAAGGTTATTGGTTGTTGCATTGAAGGAGAAGAGAAAATGTTGGTTTATGAATACATGTCCAACAAAAGCTTAGATTCCTTTATTTTTGATCCTACTCAAAGTGCACGCTTAGATTGGCCTAAACGCTTCAACATTATTAATGGAATTGTGCGAGGTCTTCTTTATCTTCATCATGATTCTAGATTAAGGATCATACACAGGGATCTTAAAGCAAGTAATATTTTATTAGACAATGAGATGAATCCAAAAATTTCAGATTTTGGCTTGGCCAGAATATGCGGGGAAGATCAAATTGAAGGGAATACAAGAAGAATAGTTGGTACATATGGTTATATGGCACCCGAATATGCGATTGATGGGCTATTTTCCATTAAATCTGATGTTTTTAGCTTCGGCATTTTATTACTGGAGATTGTAAGCGGAATGAAAAACAAAGTAGTTTCCTTTCCAAGCCACGGTTTTCATCTTCTTGGGCATGCATGGAAGTTATGGAAGGAGAACACTCCGATAAAATTGATTGATGCTTGTTTACAAGATTCATTGATTCTATCTGAAGCTTATCGTTGCATTCACATTGGCCTTTTATGTGTGCAATACCATCCTCATGATAGGCCAAACATGACATCTGTGGTTGTAATGTTGAGCAGTGATACTGCTTTGCCTGAACCGAAAGAGCCCCACTTTTTGTCAGCAAAAAGCCCAATTGAAGGAGAATCTTCATCTGTGAAGTTAACATCTTCAACGAATGATGTAACTATTTCACTATTAGAAGCTAGATAA 2511 0.3891 MDILHALLVISNLLLFFFSQISSATDTITQFNPLIDGTTLVSRNGTFELGFFNPGSSSNRYVGIWYKNIPDRKFVWVANRDNPIKDNSSKLIISQEGNLVLLNQNQSLLWSTNSTTKASSPIVQLLDTGNLVLRDEKDNNNDEESFLWQSFDYPSDTMLPGMKIGWDRKTGINRRITAWKNWDDPSPGDFTWGIVLTSNPEMAMWKNSIVFYRSGPWNGDRFSGSPTMRDNPVYDYKFVNTSNEVTYTYSLKNKSMISIVVMNQSVYLRHRFTWIPATKAWKLYHSSPRDICDTYNLCGPNGNCVYGESPICQCLDGFKPKSSQNWEAMDWTQGCMRRELWSCRVKGKDGFRRFAGLKLPDTTHSWVNETMTLDECKAKCLEDCSCTAYSNSDVMGGGSGCAIWFGDLLNLRIIESGQDLYIRMAFSETDLTSSVSSLCKAVDGDAKDGHKKKVAIVITITLLFVLVLLFALCYIYKTKRKYRVNIEKNLLSGEKHEEGQEDLELPFFDLPTIINVTDDFSIDNKLGEGGFGPVYKGILGDQQEIAVKRLSRASQQGLQEFKNEVILCAKLQHRNLVKVIGCCIEGEEKMLVYEYMSNKSLDSFIFDPTQSARLDWPKRFNIINGIVRGLLYLHHDSRLRIIHRDLKASNILLDNEMNPKISDFGLARICGEDQIEGNTRRIVGTYGYMAPEYAIDGLFSIKSDVFSFGILLLEIVSGMKNKVVSFPSHGFHLLGHAWKLWKENTPIKLIDACLQDSLILSEAYRCIHIGLLCVQYHPHDRPNMTSVVVMLSSDTALPEPKEPHFLSAKSPIEGESSSVKLTSSTNDVTISLLEAR. 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05017 836 ProSiteProfiles EGF-like domain profile. 288 324 IPR000742 -
Seca3g05017 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 151 - -
Seca3g05017 836 Pfam Protein tyrosine and serine/threonine kinase 521 789 IPR001245 GO:0004672|GO:0006468
Seca3g05017 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 596 799 - -
Seca3g05017 836 PIRSF SRK 1 836 IPR024171 GO:0004674
Seca3g05017 836 Gene3D Hepatocyte Growth Factor 342 424 - -
Seca3g05017 836 Pfam S-locus glycoprotein domain 212 322 IPR000858 GO:0048544
Seca3g05017 836 Gene3D Transferase(Phosphotransferase) domain 1 596 801 - -
Seca3g05017 836 Pfam Domain of unknown function (DUF3403) 792 836 IPR021820 GO:0004674
Seca3g05017 836 CDD PAN_AP_plant 342 425 - -
Seca3g05017 836 CDD STKc_IRAK 526 791 - -
Seca3g05017 836 SMART blect_4 31 154 IPR001480 -
Seca3g05017 836 Gene3D Phosphorylase Kinase; domain 1 494 595 - -
Seca3g05017 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 485 595 - -
Seca3g05017 836 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 185 IPR036426 -
Seca3g05017 836 SMART serkin_6 520 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05017 836 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Seca3g05017 836 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 782 - -
Seca3g05017 836 Pfam PAN-like domain 343 410 IPR003609 -
Seca3g05017 836 SMART ntp_6 346 424 IPR003609 -
Seca3g05017 836 SUPERFAMILY Protein kinase-like (PK-like) 504 791 IPR011009 -
Seca3g05017 836 CDD B_lectin 32 154 IPR001480 -
Seca3g05017 836 ProSiteProfiles PAN/Apple domain profile. 343 425 IPR003609 -
Seca3g05017 836 Gene3D - 19 151 IPR036426 -
Seca3g05017 836 ProSiteProfiles Protein kinase domain profile. 520 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g05017 836 Pfam D-mannose binding lectin 74 180 IPR001480 -
Seca3g05017 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05017 Seca-Chr3 98003043 98013536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05017 508 836 Receptor kinase-like Gene Family AT4G11530 54.896 6.89e-121 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g05017 PK_Tyr_Ser-Thr 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05017 - - gmx:100790436 1124