Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05015 ATGAGACTAGCAGGGGCATACTCAGGCTTGGTTAGTGGTGGAACTGGGTCTCATTCTTTGCCGTTGGCAAGGATCAAGAAGATAATGAAGAAGTCTGGTGATGAAGTGAAGATGATATCGGGTGAAGCTCCGATTGTTTTCTCAAAGGCTTGTGAGCTGTTCATTGAGGAACTAGCCAGAAGGTCGTGGAATATGACCATCCAAGGCAAAAGGAGAACTTTACACAAAGAGGACGTCGCCTCTGCTGTTATAGCCACTGATCTCTTCGACTTTTTGATTACTTTAGTTTCGGATTCCAACAGGGCAACTCTCTTAGGCAACGGTAGTGGGAACACCATCGCAGCCACCAACTTCCATGGCTAG 363 0.4683 MRLAGAYSGLVSGGTGSHSLPLARIKKIMKKSGDEVKMISGEAPIVFSKACELFIEELARRSWNMTIQGKRRTLHKEDVASAVIATDLFDFLITLVSDSNRATLLGNGSGNTIAATNFHG. 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05015 120 Gene3D Histone, subunit A 12 97 IPR009072 GO:0046982
Seca3g05015 120 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 18 99 - -
Seca3g05015 120 FunFam Nuclear transcription factor Y subunit C 8 98 - -
Seca3g05015 120 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 19 83 IPR003958 -
Seca3g05015 120 SUPERFAMILY Histone-fold 15 92 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05015 Seca-Chr3 97971112 97971474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05015 17 106 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.440 2.67e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca3g05015 CBFD_NFYB_HMF 3.4e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05015 - - ccaj:109817175 165.622