Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g05004 ATGGCAGATGATCAGTTTCAAGCAAGTGCAAACTGGTGGGAGACAGGGAGAAACATGAGGTTTGAAAGTGGGGAATCACAATCTTCTTCTTCTGGACTCACCAACATAGGCAACTTTGGAGGATGGCAACAACAACATCAACAACATCATGATACCATATCTGCCTCAGGTAGTTCCTCTGTGGTTTTCCATGATACCCAGAAGCTTCAACCTCCTGATTCTGCAACTTCCAGCAACGACCCCAACTTGCATATGATGGGTTTAGGCCTTTCATCAAGAGCCATGGATTGGAATCAAGCATCTTTGATTAGACGAGGTGAGAAGGCTTCAGAGGGCAGTTTCAGGTCGATGCTGCAAGAGAATTTGAGCTCATCAAACACTAATTTTCAGCAAGAAACTGGTGGGGTTGGTTTATCTCATTGGAGACCAGAGAAGTTGTTCTCTCCAGAAGCTTCTAGCAATGAATTCAAGCAACAAGTGAATAGGGGTTTCTCTTTGGATCAAACCCAATTTAGTCCTCAATATAGCTCAGGGGATAGCACTGTGACAAGCCAAGGTTTGCCTTGTACTTTTCAGATGGATTCCTCAGCTTTATATGGGAACACTTCAATATTGCAAGGACTATTAGGACCTGAAAACAATCAACCCCAACAAGGTTCATTTGAGAATCGCCAAATGAATTTCCCATACTCAACAAGCTATGGTTTGAACTCCAATGAGTTAATGCCTTCTTGGTCTAAAGTTCCTCAGTTCTTAAGAGCTTCACCTCCTAAACAACAACAACCACAAAATAACCAGTTGCATTTCACCAACAACGCTCCCTTTTGGAATGCTAATTCTGAGACCACTATTAAGGATGCTCGATCCAGCTTCTTCCCCTCAATGCAACCCCCATTTCCCACACCAAATTTTGATGCACAATCAAAGAATATATCTGAAGTTAGAGAGTCAAGTACTGGTGTGGTGAAGAAAAGTGGAAGTGAGCCAGCACCCAAAAGGCCCAGGAATGAAACCCCATCACCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCCATTGAATATATCAAATTCCTCCATGAACAAGTGACTGTTTTAAGCACCCCATATATGAAAAGTGGAGCTCCAATACAGCATCAACAGAGTTCTGGTAAATCTAAGGAAGGTGATGGTCCAAAGCAGGATCTTAGAAGCCGAGGGCTATGTTTGGTGCCAGTTTCTAGTACATTTCCAGTGACTCATGAACCTACAGTTGAATATTGGACGCCAACATTTGGAGGAACTTACAGATAG 1371 0.4311 MADDQFQASANWWETGRNMRFESGESQSSSSGLTNIGNFGGWQQQHQQHHDTISASGSSSVVFHDTQKLQPPDSATSSNDPNLHMMGLGLSSRAMDWNQASLIRRGEKASEGSFRSMLQENLSSSNTNFQQETGGVGLSHWRPEKLFSPEASSNEFKQQVNRGFSLDQTQFSPQYSSGDSTVTSQGLPCTFQMDSSALYGNTSILQGLLGPENNQPQQGSFENRQMNFPYSTSYGLNSNELMPSWSKVPQFLRASPPKQQQPQNNQLHFTNNAPFWNANSETTIKDARSSFFPSMQPPFPTPNFDAQSKNISEVRESSTGVVKKSGSEPAPKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSSGKSKEGDGPKQDLRSRGLCLVPVSSTFPVTHEPTVEYWTPTFGGTYR. 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g05004 456 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 135 437 - -
Seca3g05004 456 CDD bHLH_AtbHLH_like 342 393 IPR045239 -
Seca3g05004 456 MobiDBLite consensus disorder prediction 21 85 - -
Seca3g05004 456 MobiDBLite consensus disorder prediction 400 424 - -
Seca3g05004 456 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 403 IPR036638 GO:0046983
Seca3g05004 456 MobiDBLite consensus disorder prediction 313 344 - -
Seca3g05004 456 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Seca3g05004 456 FunFam Transcription factor bHLH123 family 346 408 - -
Seca3g05004 456 MobiDBLite consensus disorder prediction 21 87 - -
Seca3g05004 456 Gene3D - 346 407 IPR036638 GO:0046983
Seca3g05004 456 SMART finulus 347 391 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g05004 Seca-Chr3 97839851 97843211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g05004 104 456 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 46.819 2.76e-85 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g05004 - - gmx:100818424 664.07