Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04993 ATGATTACAGTTATCTATATATTTCTTCCCTCTTTCAAAGTTTCCATAGCTGCAGCAGGTGACTCTATTCGTTTGTTACAGTCCATCAACGATAGCCAGACCCTGGTGTCCCAAAATGGAAGGTTTGAACTCGGATTTTTCAGGCCCGGTAACTCTAACAAAACTTACCTGGCTATTTGGTACAAGAATATCCCTGTTGAGAGAGTTGCTTGGGTTGCAAACAGAGTCAACCCTATCAATGGTTCAAACGGAATCTTAACCGTTAACAGCACAGGCAGCCTTGTCCTCAGCCAAAACGGCACCGTTGTTTGGAACACAACCTCTCAAAAGCAAGCACAGAATCCAGTAGCTGTTCTCTTAGACAGTGGCAATTTTGTGGTAAGAAATGAGGGAGAAACAAACCCCGAAGACTATTTGTGGCAGAGCTTTGACTATCCATCACATGCAATGTTGCCTGGTATGAAATTGGGATGGAACCTGAGAATTGGTCAAAATTGGGAATTAACATCTTGGAAGAGTCCAATAGATCCTTCTCCTGTTGATGTTTCTTTGGGTTTAGTACTTCATGCTTATCCTGAGTATGTTATGATGAAGGGAACAGAGAAATTCTACCGTCTTGGACCATGGAATGGCCTACATATTGGTGGATTACCAGAATTGCAATCTAACTCCTTTATGACTTACAAGCTTGTCACCAACAACGATGAGAATTTCTACACCTATACTCTCAATAACAATTCTGTTACCTCATATATAGTATTAAACCAAACCAATTTTGTTCACTATGTGTGGCATGAAGAATATCATGATTGGAGGATTTACATATCACTCCCGAAAGACTATTGTGACACATATGGCCTTTGTGGAGCATATGGAAATTGCAAAATTAACGAGGCACAAGTTTGTCAATGTTTGAATGGGTTCAGTCCAAAGTCACCACAAGCATGGATAACATCGGATTGGGCTCAAGGATGTGTCCGAAATGAACCGTTAAGGTGCAACGACACACACAAGGATGGGTTTGTCAAATTTGAAGGGCTCAAAGTTCCAGATACTACACATACTTGGTTAGATGAAACTATGGAACTAGAGGAATGCAGAGACAAGTGCTTGAATAATTGCTCTTGTATGGCTTATGCAAATTCAGACATAAGTGGAGCAGGTAGTGGCTGTGTCATGTGGTTTGAAGATCTAATTGACATAAGACAGTTTGAAGATGGTGGGCAAGATCTTTATATTCGGATGAAACTTGAAGAGCGTGAAAATAGGCGTAAAAGAAGGAGAAGGACCATAATTGCTACGACCATTGCTGCAATTTGCGGGGTGCTTTTAATATGTCTTTATTTTATCCGGAGAGTCAAAAGGAAGATTACTGATTTTTCCCATTTTGTAGAGAGATCTCAACAGTATGTGGATGATTTAGATCTCCCTTTATTTGATCTATCAATAATTTCTATTGCCACTGATGGCTTCTCAATGAATAAAAAGATTGGAGAAGGTGGTTTTGGTCCTGTATATAAGGGAAAATTAGTAGATGGTCAAGAAATTGCCGTCAAGAAACTTTCAAGCTTGTCGAGCCAAGGAATGACTGAGTTCATAAATGAAGTAAAACTAATTGCACAACTTCAACACCGTAATCTTGTAAAACTTTTAGGTTGTTGCATACAAGGAGAAGAACGAATGTTGGTTTACGAATACATGGCCAATGGCAGCCTAGACTCTTTTATTTTCAATAATACCAAGGGTAAATTGTTAGAGTGGCCTCAACGGTTCAACATAATATGTGGAATTGCTAGGGGTTTGATGTATCTTCACCAAGATTCAAGATTGAGGATTATCCATAGAGATCTCAAAGCAAGCAATGTTTTACTTGATGATAATTTGAATCCAAAAATATCAGATTTTGGAACTGCTAGAATTTTTGGAGCAAATCAAACTGAAGGAAACACAAAAAGAATAATTGGGACATATGGATACATGGCACCTGAGTATGCTGTTGATGGGTTGTTTTCTATGAAATCTGATGTTTTTAGCTTCGGAATTTTATTGTTAGAGGTTATATGTGGAAAGCGAAATAGAGCATATTATCACATGGATGGCATTCTTAACCTTGTTGGCCAAGCTTGGACATTATGGAAAGAGGATAGGGCTTTAGAGTTGGTGGATTCAAACATAGGTAACACATATGTTGTATCAGAAGTGTTGCGTTGCATGCACGTTAGTCTCTTGTGCGTGCAACAAAACCCAAATGATAGGCCTACCATGACCTCTGTTATTTTAATGTTGGGCAGTGAGATGGAATTGGTGGAGCCTAAAGAACCTGGTTTCATTTTGAGAAATATTTCAACTGAACAGACAAGTCAAAAGGATAATAGTTCGGTAAATGAATTTGTCCGAATAACAAAGTATCACAAATTTACGAAATCAATGAAGATTCTTATTTTCATGGTCACAGTTACCTATATACTCCTTCCCTCTCTCAAATTTACCATAGCAGCTGACTCAATTCGTTTCTCACAGTCCATCAGCGATGGCAACACGTTGGTTTCCCAAAGTGGAAGGTTTGAACTCGGTTTTTTCAGGCCCGGTAACTCTAACAAAACTTACCTTGGTATTTGGTACAAAAACCTCCCTGTCGAGAGAGTTGTTTGGGTTGCAAACAGAGTCAACCCCATTAACGGTTCAAACGGCATCTTAACCGTTAACAGTACAGGGAGGCTCATCCTCAGCCAAAACGGCACCGTTGTTTGGAACACAACCTCTCAAAAGCAAGCACAGAATCCAGTTGCAGTTCTCTTAGACAGTGGCAATTTTGTGGTAAGAAATGAGGGAGAAACAAACCTTGAAGACTATTTGTGGCAGAGCTTTGACTATCCATCACACACAATGTTGCCTGGGATGAAATTGGGAAGGAACCAAAGAATTGGTCAAAATTGGCACTTGACATCATGGAAGAGTCCAGAAGATCCATCCCCTGGAGATGTTTCTTGGGGCTTAGTACTTCATGCTTATCCTGAGTTTGTTATGATGAAGGGAACAGACAAGTTCTACCGTCTTGGACCATGGAATGGCCTATATGTTAGTGGATTACCAGAACAAGAATCCACCTCCTTGATAAATTTCATGTTTGTCACAAGCAGCGATGAGAACTTCTACACTTTTGGCCTCAATAACAGTTCTGCTATCTCATTTATAGTATTAAATGATACCAATATTTTTCACTATGTATGGGATGAAGGTGATCATAATTTGAGGATTTACATAAAACTCCCCAAAGACTATTGTGATACATATGGTCTTTGTGGAGCCTATGGGAATTGCAGAATCACCCAAGGAGATGTGTGCCAATGTTTGAAAGGGTTCAGTCCAAAGTCACCACAAGCATGGATCTTAACGGATTGGACTCAAGGATGTGTCCGTGATGAACCGTTAAGCAGCTGCAACGACACACATAAGGATGGGTTTGTCAAATTTGAAGGGCTCAAAGTTCCAGATACTACACATACTTGGTTAAATGAAAGTATGGGTCTAGAGGAATGCAGAGACAAGTGCTTGAATAATTGCTCTTGTATGGCTTATGCAAATTCAAACATAAGTGGAGCAGGTAGTGGTTGTGTCATGTGGTTTGAAGATCTAATTGACATAAAGCAATTTGAAGATGGTGGACAAGATCTATATATTCGGATGTCTGGTTCAGAGTTAGGTAAGCGTAAAAGGAAGAGAAGGACCATAATTGCTACTACCACCATTGCTTCAATTTGCGGGGTGCTTTTACTATGTCTTTATTTTATCTGGAGAGTCAGAAGGAAGATTGTTGGTAATCAAAGATATCAATGGCATGTGGATGAATTGGATCTTCCATTATTTGATCTATCAACAATTTCTATTGCCACTGATGACTTTTCAATGAATAAAAAGATTGGAGAAGGAGGCTTTGGACCTGTATATAAGGGAAAATTAGTAGATGGTCAAGAAATTGCCGTCAAGAAACTTTCAAGCTTGTCGGGGCAAGGAATGACTGAGTTCATAAATGAAGTAAAACTAATTGTACAACTTCAACACCGAAATCTTGTAAAGCTTCTAGGTTGTTGCATACAAGGAGAACAACAAATGTTGGTTTATGAATACATGGCTAATGGCAGCCTAGACTCTTTCATATTCGATAATACCAAGGGTAAATTGTTAAACTGGCCTCAACGATTCAACATAATATGCGGAATTGCTAGAGGGTTGATGTATCTTCATCAAGATTCAAGATTGAGGATTATCCATAGAGATCTCAAAGCAAGTAATGTTTTACTTGACGATAATTTGAATCCAAAAATATCAGATTTTGGAACTGCTAGACTTTTTGGAGGAGATCAAACTGAAGGAAAAACAAAAAGAATAATTGGGACATATGGGTACATGGCACCCGAATATGCTATTGATGGGTTATTTTCTATAAAATCTGACGTTTTTAGCTTCGGAATTTTATTGTTGGAGATTATATGTGGTAAAAGAAATAGGTCATATTATCACATGGATGATAGTCTTAACCTTGTTGGCCAAGCTTGGACAATGTGGAAAGAGGACAAGGCTTTAGAGTTGATTGACTCTAACATAGGTGACACATATCTTGTATCAGAAGTGTTGCGATGCATGCAAGTTAGTTTCTTATGCGTGCAGCAGAACCCAAACGATAGACCAACCATGACCTCTGTGATTTTAATGTTGGGGAGTGAGATGGAATTGGTGGAGCCTAAAGAACCTGGTTTTATTTCAAGAAATATTCCAACTGAATCACATTTATACACAAGTCAAAAGGATACTAGTTCAGTAAATGAAGTTACCATTTCCTTAGTAGATGCTCGATGA 4857 0.3885 MITVIYIFLPSFKVSIAAAGDSIRLLQSINDSQTLVSQNGRFELGFFRPGNSNKTYLAIWYKNIPVERVAWVANRVNPINGSNGILTVNSTGSLVLSQNGTVVWNTTSQKQAQNPVAVLLDSGNFVVRNEGETNPEDYLWQSFDYPSHAMLPGMKLGWNLRIGQNWELTSWKSPIDPSPVDVSLGLVLHAYPEYVMMKGTEKFYRLGPWNGLHIGGLPELQSNSFMTYKLVTNNDENFYTYTLNNNSVTSYIVLNQTNFVHYVWHEEYHDWRIYISLPKDYCDTYGLCGAYGNCKINEAQVCQCLNGFSPKSPQAWITSDWAQGCVRNEPLRCNDTHKDGFVKFEGLKVPDTTHTWLDETMELEECRDKCLNNCSCMAYANSDISGAGSGCVMWFEDLIDIRQFEDGGQDLYIRMKLEERENRRKRRRRTIIATTIAAICGVLLICLYFIRRVKRKITDFSHFVERSQQYVDDLDLPLFDLSIISIATDGFSMNKKIGEGGFGPVYKGKLVDGQEIAVKKLSSLSSQGMTEFINEVKLIAQLQHRNLVKLLGCCIQGEERMLVYEYMANGSLDSFIFNNTKGKLLEWPQRFNIICGIARGLMYLHQDSRLRIIHRDLKASNVLLDDNLNPKISDFGTARIFGANQTEGNTKRIIGTYGYMAPEYAVDGLFSMKSDVFSFGILLLEVICGKRNRAYYHMDGILNLVGQAWTLWKEDRALELVDSNIGNTYVVSEVLRCMHVSLLCVQQNPNDRPTMTSVILMLGSEMELVEPKEPGFILRNISTEQTSQKDNSSVNEFVRITKYHKFTKSMKILIFMVTVTYILLPSLKFTIAADSIRFSQSISDGNTLVSQSGRFELGFFRPGNSNKTYLGIWYKNLPVERVVWVANRVNPINGSNGILTVNSTGRLILSQNGTVVWNTTSQKQAQNPVAVLLDSGNFVVRNEGETNLEDYLWQSFDYPSHTMLPGMKLGRNQRIGQNWHLTSWKSPEDPSPGDVSWGLVLHAYPEFVMMKGTDKFYRLGPWNGLYVSGLPEQESTSLINFMFVTSSDENFYTFGLNNSSAISFIVLNDTNIFHYVWDEGDHNLRIYIKLPKDYCDTYGLCGAYGNCRITQGDVCQCLKGFSPKSPQAWILTDWTQGCVRDEPLSSCNDTHKDGFVKFEGLKVPDTTHTWLNESMGLEECRDKCLNNCSCMAYANSNISGAGSGCVMWFEDLIDIKQFEDGGQDLYIRMSGSELGKRKRKRRTIIATTTIASICGVLLLCLYFIWRVRRKIVGNQRYQWHVDELDLPLFDLSTISIATDDFSMNKKIGEGGFGPVYKGKLVDGQEIAVKKLSSLSGQGMTEFINEVKLIVQLQHRNLVKLLGCCIQGEQQMLVYEYMANGSLDSFIFDNTKGKLLNWPQRFNIICGIARGLMYLHQDSRLRIIHRDLKASNVLLDDNLNPKISDFGTARLFGGDQTEGKTKRIIGTYGYMAPEYAIDGLFSIKSDVFSFGILLLEIICGKRNRSYYHMDDSLNLVGQAWTMWKEDKALELIDSNIGDTYLVSEVLRCMQVSFLCVQQNPNDRPTMTSVILMLGSEMELVEPKEPGFISRNIPTESHLYTSQKDTSSVNEVTISLVDAR. 1619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04993 1618 Pfam Protein tyrosine and serine/threonine kinase 1302 1569 IPR001245 GO:0004672|GO:0006468
Seca3g04993 1618 Pfam Protein tyrosine and serine/threonine kinase 492 759 IPR001245 GO:0004672|GO:0006468
Seca3g04993 1618 Gene3D - 829 956 IPR036426 -
Seca3g04993 1618 Gene3D - 14 143 IPR036426 -
Seca3g04993 1618 Gene3D Hepatocyte Growth Factor 333 415 - -
Seca3g04993 1618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1422 1434 IPR008271 GO:0004672|GO:0006468
Seca3g04993 1618 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1377 1580 - -
Seca3g04993 1618 ProSiteProfiles Protein kinase domain profile. 491 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04993 1618 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 567 770 - -
Seca3g04993 1618 CDD STKc_IRAK 1307 1572 - -
Seca3g04993 1618 CDD PAN_AP_plant 330 414 - -
Seca3g04993 1618 SMART blect_4 839 959 IPR001480 -
Seca3g04993 1618 SMART blect_4 26 146 IPR001480 -
Seca3g04993 1618 SUPERFAMILY alpha-D-mannose-specific plant lectins 882 990 IPR036426 -
Seca3g04993 1618 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1267 1376 - -
Seca3g04993 1618 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 16 143 - -
Seca3g04993 1618 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 332 415 - -
Seca3g04993 1618 ProSiteProfiles EGF-like domain profile. 1091 1127 IPR000742 -
Seca3g04993 1618 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 177 IPR036426 -
Seca3g04993 1618 Pfam S-locus glycoprotein domain 204 312 IPR000858 GO:0048544
Seca3g04993 1618 Pfam S-locus glycoprotein domain 1017 1125 IPR000858 GO:0048544
Seca3g04993 1618 ProSiteProfiles Bulb-type lectin domain profile. 833 953 IPR001480 -
Seca3g04993 1618 SUPERFAMILY Protein kinase-like (PK-like) 1283 1572 IPR011009 -
Seca3g04993 1618 Gene3D Phosphorylase Kinase; domain 1 454 566 - -
Seca3g04993 1618 Gene3D Phosphorylase Kinase; domain 1 1266 1376 - -
Seca3g04993 1618 ProSiteProfiles Bulb-type lectin domain profile. 20 140 IPR001480 -
Seca3g04993 1618 Pfam Domain of unknown function (DUF3403) 1575 1618 IPR021820 GO:0004674
Seca3g04993 1618 ProSiteProfiles PAN/Apple domain profile. 1147 1230 IPR003609 -
Seca3g04993 1618 SUPERFAMILY Protein kinase-like (PK-like) 469 762 IPR011009 -
Seca3g04993 1618 ProSiteProfiles PAN/Apple domain profile. 333 416 IPR003609 -
Seca3g04993 1618 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 829 956 - -
Seca3g04993 1618 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 753 - -
Seca3g04993 1618 CDD PAN_AP_plant 1145 1228 - -
Seca3g04993 1618 SMART ntp_6 1150 1229 IPR003609 -
Seca3g04993 1618 SMART ntp_6 336 415 IPR003609 -
Seca3g04993 1618 SMART serkin_6 1301 1579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04993 1618 SMART serkin_6 491 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04993 1618 CDD B_lectin 27 146 IPR001480 -
Seca3g04993 1618 CDD B_lectin 839 959 IPR001480 -
Seca3g04993 1618 Gene3D Transferase(Phosphotransferase) domain 1 567 773 - -
Seca3g04993 1618 Gene3D Transferase(Phosphotransferase) domain 1 1377 1582 - -
Seca3g04993 1618 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1146 1229 - -
Seca3g04993 1618 CDD STKc_IRAK 497 762 - -
Seca3g04993 1618 ProSiteProfiles Protein kinase domain profile. 1301 1579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04993 1618 Pfam D-mannose binding lectin 69 172 IPR001480 -
Seca3g04993 1618 Pfam D-mannose binding lectin 882 985 IPR001480 -
Seca3g04993 1618 Pfam PAN-like domain 1147 1215 IPR003609 -
Seca3g04993 1618 Pfam PAN-like domain 333 401 IPR003609 -
Seca3g04993 1618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Seca3g04993 1618 FunFam receptor-like serine/threonine-protein kinase SD1-8 464 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04993 Seca-Chr3 97477224 97493883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04993 425 793 Receptor kinase-like Gene Family AT4G05200 48.800 2.37e-115 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g04993 PK_Tyr_Ser-Thr 9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04993 - - gmx:100812007 2004.18