Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04992 ATGATTACATTTACCTACATACTCGTTCCATCTCTCCAAGTTTCCAGAGCAACTGACTCTATCCGGTTGTCACGGTCCATCAGCCATGGCAAGACGTTAGTGTCCCAAAGTGGAAGGTTTGAACTCGGTTTCTTCACTCCCGGTAACTCTAACAAAACTTACCTGGGTATTTGGTACAAGAATATCCCTGTTGAGAGAGTTGTTTGGGTTGCAAACAGGGTGAGCCCCATCAATGGTTCAAACCCAATCTTAACAGTTAACAATACAGGCAGCCTCGTTCTCAGCCAAAATGGTGCAGTTGTTTGGTACGCAGCCTCTCAAAAGAAAGCACAGAATCCAGTGGCAGTGCTGTTGGACAGTGGCAATCTTGTGGTAAGAAATGAGGGAGAAACAAACCCTGAAGACTATTTGTGGCAGAGCTTTGACTATCCATCACATGCAATGTTGCCTGGCATGAAATTGGGATGGAACCTCCGAAACAGTCTAGATAGGCAATTAACACCATGGAAGAGTCCAGAAGATCCATCCCCTGGTGATGTTTCTTGGGGTTTAGCACTTTCTGCTTATCCTGAGTTTCGTATGATGAAGGGAACACAGAAGCTTTACCGGATTGGACCATGGAATGGCCTACTTTTTAGTGGATTACCACTACTTCGATCTCGCACCTTGGTAAATTTCGAATTTGTAAAAAAAGAAGATGAGATCTACTACACATATAGCCTCAAGAACAATTCTGTCATCTCATATATAGTATTAAACCAAACTAATCTTTATCGCTATGTATGGGATGAACGAGATCACGATTGGAGGATTTATATATCACTCCCCAAAGACTATTGTGACAAGTATGGCCTTTGTGGAGCCTATGGAAATTGCATGATTTCCAAATATGAGGTCTGCCAATGTTTGAATGGGTTCAGCCCAAAGTCACCACAAGCATGGACCACATCGGATTGGGCTCAAGGATGTGTCCGAAATGAACCGTTAAGCAGCTGCAACGACACACACAAGGATGGGTTTGTCAAATTTGAAGGGCTCAAAGTTCCAGATACTACACATACCTGGTTAGATGAAAGTATGGATCTAGAGGAATGCAGAGACAAGTGCTTGAATAATTGCTCTTGTATGGCTTATACAAATTCAAACATAAGTGGAGCAGGTAGTGGCTGTGTCATGTGGTTCGGTGATCTAATTGACATGAGACAACTTGATGATGGTGGGCAAGATCTTTATATCCGTATGGTAGCTGGTCTGGAATTAGTCAAAGTCAACCATGCACATAGCCACGACAAAAGGGTGACAAAAATAATTGCTACTACCGTTGCTGCAATTTGTGGGATGCTTATATTTTGCATTTATGCCATATACAGAGTCCGAAGGAAAATTGCAGGTAAATTATTATTCACTAATATTATTGATAACGACATTGAAATACATCTAGATGAGCTGGATTTGCCATTATTCGATCTGCAAACAATTACTACTGCCACTCACAACTTCTCGTTGAATAATAAAATTGGACAAGGTGGTTTTGGACCTGTATATAAGGGGAAATTAGCAGATGGGCAAGAAATTGCTGTTAAGAGACTTTCAAGTAGTTCCGGACAAGGAATTTCTGAGTTCTTAACAGAAGTCAAACTAATTGCAAAACTTCAACACAGAAATCTTGTAAAGCTTCTTGGCTGTTGTATTCGAGGAGAAGAAAAATTGCTAGTATATGAATTTATGGCTAATGGTAGCCTTGACTCCTTTATTTTTGGTAAGAAAACAGAACAAATAAAAGGTAAATTGCTGGAGTGGCCCCAACGCTTCAACATAATATTTGGAGTTGCTAGAGGGCTTTTGTATCTTCATCAAGATTCTCGATTAAGAATCATTCATAGAGATCTCAAAGCAAGTAATGTTTTACTCGATGATAAGTTAAATCCAAAAATATCAGATTTTGGAATGGCCAGATCTTGTGGAGGAGAACAGATTGAAGGAAACACAAATAGAATAGTTGGGACTTATGGATACATGGCACCAGAGTATGCTGTTGATGGGCTATTTTCAATAAAATCTGATGTTTTCAGCTTTGGTATTTTATTGTTGGAGATTATATGTGGGAACAAAAATAGAGCTCTTTGTCATAGAAACCAGACTCTTAACCTTGTTGGTCATGCATGGAAACTTTGGATGGAGGAAAACGCTTTACAATTGATTGACTCAAGAATAAAGGACTCATGTGTTATCTCAGAGGTATTGCGATGCATCCATGTTGGTCTCTTATGTGTGCAGCAATATCCGGAGGATAGACCAACCATGACCTCAGTGGTACAAATGTTAAGTAGTGAAAAGGAACTGGTTGACCCCAAAGAGCCTGGGTTCTTCCCAAGGAATGTTTCTGATGGAGGAAATTCAAGCTCAAATCAAAATGAAATGAGTACAAATGATGAATTAACTATTACCTCATTAAATGGCCGATGA 2466 0.3994 MITFTYILVPSLQVSRATDSIRLSRSISHGKTLVSQSGRFELGFFTPGNSNKTYLGIWYKNIPVERVVWVANRVSPINGSNPILTVNNTGSLVLSQNGAVVWYAASQKKAQNPVAVLLDSGNLVVRNEGETNPEDYLWQSFDYPSHAMLPGMKLGWNLRNSLDRQLTPWKSPEDPSPGDVSWGLALSAYPEFRMMKGTQKLYRIGPWNGLLFSGLPLLRSRTLVNFEFVKKEDEIYYTYSLKNNSVISYIVLNQTNLYRYVWDERDHDWRIYISLPKDYCDKYGLCGAYGNCMISKYEVCQCLNGFSPKSPQAWTTSDWAQGCVRNEPLSSCNDTHKDGFVKFEGLKVPDTTHTWLDESMDLEECRDKCLNNCSCMAYTNSNISGAGSGCVMWFGDLIDMRQLDDGGQDLYIRMVAGLELVKVNHAHSHDKRVTKIIATTVAAICGMLIFCIYAIYRVRRKIAGKLLFTNIIDNDIEIHLDELDLPLFDLQTITTATHNFSLNNKIGQGGFGPVYKGKLADGQEIAVKRLSSSSGQGISEFLTEVKLIAKLQHRNLVKLLGCCIRGEEKLLVYEFMANGSLDSFIFGKKTEQIKGKLLEWPQRFNIIFGVARGLLYLHQDSRLRIIHRDLKASNVLLDDKLNPKISDFGMARSCGGEQIEGNTNRIVGTYGYMAPEYAVDGLFSIKSDVFSFGILLLEIICGNKNRALCHRNQTLNLVGHAWKLWMEENALQLIDSRIKDSCVISEVLRCIHVGLLCVQQYPEDRPTMTSVVQMLSSEKELVDPKEPGFFPRNVSDGGNSSSNQNEMSTNDELTITSLNGR. 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04992 821 ProSiteProfiles Bulb-type lectin domain profile. 18 138 IPR001480 -
Seca3g04992 821 Pfam S-locus glycoprotein domain 202 310 IPR000858 GO:0048544
Seca3g04992 821 ProSiteProfiles Protein kinase domain profile. 500 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04992 821 CDD PAN_AP_plant 330 413 - -
Seca3g04992 821 SUPERFAMILY Protein kinase-like (PK-like) 482 775 IPR011009 -
Seca3g04992 821 Gene3D Transferase(Phosphotransferase) domain 1 576 786 - -
Seca3g04992 821 CDD B_lectin 24 144 IPR001480 -
Seca3g04992 821 MobiDBLite consensus disorder prediction 782 821 - -
Seca3g04992 821 Pfam PAN-like domain 332 400 IPR003609 -
Seca3g04992 821 CDD STKc_IRAK 506 775 - -
Seca3g04992 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Seca3g04992 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 331 414 - -
Seca3g04992 821 Pfam Protein tyrosine and serine/threonine kinase 501 775 IPR001245 GO:0004672|GO:0006468
Seca3g04992 821 PIRSF SRK 1 821 IPR024171 GO:0004674
Seca3g04992 821 ProSiteProfiles PAN/Apple domain profile. 332 415 IPR003609 -
Seca3g04992 821 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 766 - -
Seca3g04992 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 175 IPR036426 -
Seca3g04992 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 14 141 - -
Seca3g04992 821 MobiDBLite consensus disorder prediction 794 821 - -
Seca3g04992 821 Gene3D - 13 141 IPR036426 -
Seca3g04992 821 FunFam receptor-like serine/threonine-protein kinase SD1-8 473 575 - -
Seca3g04992 821 SMART blect_4 24 144 IPR001480 -
Seca3g04992 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 576 783 - -
Seca3g04992 821 SMART serkin_6 500 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04992 821 Gene3D Phosphorylase Kinase; domain 1 476 575 - -
Seca3g04992 821 Pfam D-mannose binding lectin 67 170 IPR001480 -
Seca3g04992 821 SMART ntp_6 335 414 IPR003609 -
Seca3g04992 821 Gene3D Hepatocyte Growth Factor 332 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04992 Seca-Chr3 97389265 97392996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04992 488 821 Receptor kinase-like Gene Family AT4G23140 54.046 3.31e-117 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g04992 PK_Tyr_Ser-Thr 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04992 - - gmx:100802962 1118.61