Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04990 ATGATTATGGTTACTTGCATATTTGTTCCCTCTATAGCAATTGATTCTATCAGTGTGTCGCAGTCTCTTAGTGATGGCAAGACCTTAGTTTCAAAAGGTGGAATATTTGAATTTGGTTTCTTCAGCCCAGGTAAGTCCCATAAACGTTACCTTGGGATTTGGTACAATAATACCGCAAGCAAAAAAGTTGTTTGGGTTGCTAACAGGGACAATCCTATCAATAATACGTTGGGCATATTAACAATGAACAGCACAGGCGACCTTATGCTCAGCCAAAACGACTCTGTTGTTTGGCGTACAGACTTAGGAAAGCAAGTACTGAATCCGGTGGCAGAGCTCTTGGACAGTGGCAATCTTGTGATAAGAAATGAGGGAGAAGCAAACACAGAAGGCTACTTATGGCAAAGCTTTGACTATCCAACTGATACAATTTTGCCGGGGATGAAGTTGGGATGGGACCTCCGAAATGGTCATGAACGGAGAATAACATCTTGGAAGAGTGCAGATGATCCATCACCCGGAAATTATTCTTTAGGTCTGGTACTCAATAATTATCCAGAGTTTTATGTCATGGAAGAAAAATTTAAGTACTGTCGCATTGGACCATGGAATGGCCTTCATTTTAGTGGCTTATCAAATCAAGAACCAAATCCAATATATGATATCAAGTTCGTTACCAATAAGGATGAGATGTTCTACTCATTTACCCTCAAGGATGCTTCTGCCTTTGTGGCTGCCATTGTATTCCAAAACCAGTTTTCTATCTTTGTGTGGAAGGAGGATAATCCAAATTGGTTGCTTTCTGAAGCAATCCCGCGGGACTTTTGTGAAATGTATGGGGCCTGTGGACCCTATGCAAATTGCTTAATTACAAAAGCACCACCATGCCAATGTTTAGAAGGGTTCAGTCCAAAATCACTGCAAGCATGGAACTCATCAGATTGGAGCGGAGGATGTGTCCGCATTAAACCATTAACCTGCAACGACGAAAACATGGATGGGTTTATCAAATATTCAAAACTCAAAGTACCAGATACTACACATACTTTACTGGATGAGAATATTCATTTACCGGAATGCAGAACCATGTGCTTGAGTAATTGCTCTTGTATGGCTTATGCAAATTCAGACATAAGTGGAGCAGGTAGTGGCTGTGTCATGTGGTTTGGTGATCTAATTGACATAAGACAGTTTGAAGATGGTGGGCAAGATCTTTATATCCGGATGTCCGTTTCAGAGTTTGTCAACCATGAAGAGCCTCAACATGGGCACAGCAAAAGTGTGACAACAATAATTGCTAGCATCACTGCTTCAATTTCTGGGATGCTTTTGTTTTGCATTTATGTCATATACAGAATCCGAAGGAAAACTGCTGGTAAATTATACTTCAATCATAAAAATTCAAAGACAATAGATAACATTGAAAGACATCTAGACAAGTTGGATCTGCCGTTGTTTGATCTGTCAACAATTACTGTTGCCACTATCGGCTTCTCCTTGAATAATAAGATTGGACAAGGTGGTTTTGGAGCAGTATATAAGGGGAAATTAGCGGATGGGCAAGAAATTGCTGTTAAGAGACTTTCAAGTAGTTCAGGACAAGGAATTTCTGAGTTCTTAACAGAAGTCAAACTAATTGCAAAACTTCAACACAGAAACCTTGTAAAGCTTCTTGGCTGTTGTATTCGAGGAGAAGAAAAATTGCTAGTATATGAATTTATGGCTAATGGTAGCCTTGACTCCTTTATTTTTGATCCAATAAAAGGTAAATTGCTGGAGTGGTCGCAACTCTTCAACATAATATTTGGAATTTCTAGGGGGCTTATGTATCTTCATCAAGATTCTCGACTAAGGATTATTCATAGAGATCTGAAAGCAAGTAATGTTTTACTTGATGATAAGTTAAATCCAAAAATATCAGATTTTGGAATGGCCAGATCTTTTGGAGGAGACCAAATTGAAGGAAACACAAATAGAGTAGTTGGAACTTATGGGTACATGGCACCAGAATATGTTGTTGATGGACTATTTTCAATAAAATCTGACGTTTTCAGCTTTGGTATTTTATTGTTGGAGATTATATGTGGGAACAAAAATAGAGCTCTTTGTCATAGAAACCAGACCCTTAACCTTGTTGGTTATGTATGGACACTTTGGAAGGAGGGAAATGCTTTACAGTTGATTGACTCAAGAATTAAAGACTCAAGTGTTGTCTCAGAAGTATTGTGA 2229 0.3872 MIMVTCIFVPSIAIDSISVSQSLSDGKTLVSKGGIFEFGFFSPGKSHKRYLGIWYNNTASKKVVWVANRDNPINNTLGILTMNSTGDLMLSQNDSVVWRTDLGKQVLNPVAELLDSGNLVIRNEGEANTEGYLWQSFDYPTDTILPGMKLGWDLRNGHERRITSWKSADDPSPGNYSLGLVLNNYPEFYVMEEKFKYCRIGPWNGLHFSGLSNQEPNPIYDIKFVTNKDEMFYSFTLKDASAFVAAIVFQNQFSIFVWKEDNPNWLLSEAIPRDFCEMYGACGPYANCLITKAPPCQCLEGFSPKSLQAWNSSDWSGGCVRIKPLTCNDENMDGFIKYSKLKVPDTTHTLLDENIHLPECRTMCLSNCSCMAYANSDISGAGSGCVMWFGDLIDIRQFEDGGQDLYIRMSVSEFVNHEEPQHGHSKSVTTIIASITASISGMLLFCIYVIYRIRRKTAGKLYFNHKNSKTIDNIERHLDKLDLPLFDLSTITVATIGFSLNNKIGQGGFGAVYKGKLADGQEIAVKRLSSSSGQGISEFLTEVKLIAKLQHRNLVKLLGCCIRGEEKLLVYEFMANGSLDSFIFDPIKGKLLEWSQLFNIIFGISRGLMYLHQDSRLRIIHRDLKASNVLLDDKLNPKISDFGMARSFGGDQIEGNTNRVVGTYGYMAPEYVVDGLFSIKSDVFSFGILLLEIICGNKNRALCHRNQTLNLVGYVWTLWKEGNALQLIDSRIKDSSVVSEVL. 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04990 742 Gene3D Hepatocyte Growth Factor 326 407 - -
Seca3g04990 742 ProSiteProfiles Protein kinase domain profile. 498 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04990 742 Gene3D Phosphorylase Kinase; domain 1 473 573 - -
Seca3g04990 742 Pfam Protein tyrosine and serine/threonine kinase 499 708 IPR001245 GO:0004672|GO:0006468
Seca3g04990 742 SMART blect_4 20 140 IPR001480 -
Seca3g04990 742 SUPERFAMILY alpha-D-mannose-specific plant lectins 63 171 IPR036426 -
Seca3g04990 742 ProSitePatterns Protein kinases ATP-binding region signature. 504 526 IPR017441 GO:0005524
Seca3g04990 742 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 10 137 - -
Seca3g04990 742 Pfam S-locus glycoprotein domain 199 306 IPR000858 GO:0048544
Seca3g04990 742 PIRSF SRK 1 742 IPR024171 GO:0004674
Seca3g04990 742 SMART ntp_6 330 409 IPR003609 -
Seca3g04990 742 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 5 701 - -
Seca3g04990 742 CDD PAN_AP_plant 324 408 - -
Seca3g04990 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Seca3g04990 742 SUPERFAMILY Protein kinase-like (PK-like) 476 738 IPR011009 -
Seca3g04990 742 Gene3D Transferase(Phosphotransferase) domain 1 574 741 - -
Seca3g04990 742 ProSiteProfiles Bulb-type lectin domain profile. 14 134 IPR001480 -
Seca3g04990 742 ProSiteProfiles PAN/Apple domain profile. 327 410 IPR003609 -
Seca3g04990 742 FunFam receptor-like serine/threonine-protein kinase SD1-8 469 573 - -
Seca3g04990 742 Pfam PAN-like domain 327 395 IPR003609 -
Seca3g04990 742 Pfam D-mannose binding lectin 63 166 IPR001480 -
Seca3g04990 742 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 574 742 - -
Seca3g04990 742 Gene3D - 11 137 IPR036426 -
Seca3g04990 742 SMART serkin_6 498 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04990 742 CDD B_lectin 20 140 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04990 Seca-Chr3 97258343 97261962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04990 420 742 Receptor kinase-like Gene Family AT4G23230 50.464 2.48e-99 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g04990 PK_Tyr_Ser-Thr 5.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04990 - - gmx:100812007 1034.25