Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04989 ATGGACCTTCACTGTTTAATGATTATGGTTGTTTGCATATTTGTTCCCTCCATAGCAATTGATTCCATTAGTGTGTCGCAGTCTCTAAGTGATGGCGAGACCTTAGTTTCGAAAGGTGGAATATTTGAATTTGGTTTCTTCAGCCCAGGTAAGTCCAATAAACGTTACCTGGGGATTTGGTACACGAATACCGCAAGTAAAAAAGTTGTTTTGGTTATTAACAGGGACAATCCCATCGATAATCCCTTGGGCATACTAACAATGAAAAGCACAGGCGATCTTGAGCTCAGCCAAAACGACTCTATTGTTTGGCGTACAGCCTTAGGAAAACAAGTACAGAATCCAGTTGCAGAGCTCTTGGACAGTGGAAATCTTGTGATAAGAAATGAGGGAGAAGAAGGCTACTTGTGGCAAAGCTTTGATTATCCAAGTGATACAATTTTGCCAGGGTTGAAGTTGGGATGGGACCTCCGAAATGGTCAGGAGCGGAGGATAACATCTTGGAAGAGTACAGATGATCCATCACTAGGAGATATTTCTTGGGGTCTAGTGCTCAATAATTATCCAGAGTTTTATATAATGAAAGGAATAGAAAAGTACTCTCGGACTGGACCATGGAATGGGGTTTATTTTAGTGGCTTACCACATTATGGAAACCCAAATCCAATTTATGATTTCCAGTTCGTTGGCCGTAATAATTTCATTTATGGCTCAAACAAGGATGAGTTGTTCTACACGTTTACCCTCAAGAATACTTCTGTTTTCGTGACTATCAATATAAGCCAATTTGGGTTTCAAACCTTTGTATACATACCGGATGGGAATAATTCAGATTGGATGCTTTATGCATCAAGCCCGCGGGATGAGTGTGATATATATGGGATCTGTGGACCCTATACCAAATGCATAGTCACAGAAAAACCATTTTGCCAATGTTTACAAGGGTTCAGTCCAAAGTCACCAGAAGGATGGAACTCATCCGACTGGTCTCAAGGATGTGTCCGTAATAAAACATTAAGCTGCGAAGTGGATGATTTTGTCAAGTTTGTAGGCCTCAAAGTACCAGCTACGACACATACTTTGCTGGATGAGAATATTAATTTAGAGGCATGCAGGGTCATGTGCTTGAGTAATTGCTCTTGTACAGCCTACGCTAATTCAGACATAAGAGGAGCAGGTAGTGGCTGTGTCATGTGGTTTGACGAACTAATTGACATAAGACAATTTGATGATGGTGGGCAAGATCTTTATATTCGTATGTCTGGCTCAGAGTTAGGTAAATGCTCTATTTTACTTCTTAATACTTCCATCATTCTTCTCAGTTTGAAAAAAAAAAAAGCCAAGATCACTCTTTCAATCTCCGGATTTAACTTTTTTGTTATTCGTTTGATCAATGTGAACCATGAAGATACTCAACATGCGCACAACAATAGTGTGACAACAATAATTGCTACCACTACTGCTGCAATTTCTGGGTTGCTTTTGTTTTGCATTTATGTCATATACAGAATCCGAAGGAAAATTGCTGAAAATTTAAAGACAACAGATAACATTGAAAGGCATCTAGATGAGCTGGATCTGCCATTATTTGATCTGTCAACACTTACCACGGCCACTAACAGCTTCTCCTTCAGTAATAAGATTGGACAAGGTGGTTTTGGTTCTGTATATAAGGGGAAATTAGCTAATGGGAGAGATATTGCTGTTAAGAGACTTTCAAGTAGCTCCAGACAAGGAATTACTGAGTTCATAACAGAAGTAAAACTAATTGCAAAACTTCAACACCGAAATCTTGTAAAGCTTCTTGGTTGTTGTATTAGAGGACAAGAAAAATTGCTAATATATGAATATATGGCTAATGGTAGCCTTGACTCCTTCATTTTTGACCAAATAAAAGGTGAATTGCTAGAATGGCCACAACGCTTCCACATAATATTTGGAGTTGCTAGGGGGCTTATGTATCTTCATCAAGATTCCCGATTAAGGATTATTCATAGAGATCTCAAAGCAAGTAATGTTTTACTAGATGACAAGTTAAATCCAAAAATATCAGATTTTGGAATGGCAAGATCTTTTGGAGGAGACCAGATTGAAGGAAACACAAATAGAGTAGTTGGGACTTATGGGTACATGGCACCAGAGTACGCTGTCGATGGGCTATTTTCAATAAAATCTGACGTTTTCAGCTTTGGTATTTTATTGTTGGAGATTATATGTGGGAACAAAAATAGAGCTCTTTGTCATAGAAACCAGACCGTTAACCTTGTTGGTTATGCATGGACACTTTGGAAGGAGGGAAACGCTCTAAAGTTGATTGACTCAAGAATAAAGGATTCATGTGTTGTCTCAGAGGTATTGCACTGCATCCATGTTAGTCTCTTATGCGTGCAACAATATCCGGAGGATAGACCAACCATGACCTCAATAGTACAAATGTTAGGTAGTGAAAAGGAATTGGTTGACCCCAAAGAGCCTGGGTTCTTCCCAAGGAATGTTTCTGATGGAGGAATTTCAGGCTCAAATCAAAATGAAATAAGTACAAATGATGAATTAACCATTACCTCATTAAATGGTCGGTGA 2580 0.3888 MDLHCLMIMVVCIFVPSIAIDSISVSQSLSDGETLVSKGGIFEFGFFSPGKSNKRYLGIWYTNTASKKVVLVINRDNPIDNPLGILTMKSTGDLELSQNDSIVWRTALGKQVQNPVAELLDSGNLVIRNEGEEGYLWQSFDYPSDTILPGLKLGWDLRNGQERRITSWKSTDDPSLGDISWGLVLNNYPEFYIMKGIEKYSRTGPWNGVYFSGLPHYGNPNPIYDFQFVGRNNFIYGSNKDELFYTFTLKNTSVFVTINISQFGFQTFVYIPDGNNSDWMLYASSPRDECDIYGICGPYTKCIVTEKPFCQCLQGFSPKSPEGWNSSDWSQGCVRNKTLSCEVDDFVKFVGLKVPATTHTLLDENINLEACRVMCLSNCSCTAYANSDIRGAGSGCVMWFDELIDIRQFDDGGQDLYIRMSGSELGKCSILLLNTSIILLSLKKKKAKITLSISGFNFFVIRLINVNHEDTQHAHNNSVTTIIATTTAAISGLLLFCIYVIYRIRRKIAENLKTTDNIERHLDELDLPLFDLSTLTTATNSFSFSNKIGQGGFGSVYKGKLANGRDIAVKRLSSSSRQGITEFITEVKLIAKLQHRNLVKLLGCCIRGQEKLLIYEYMANGSLDSFIFDQIKGELLEWPQRFHIIFGVARGLMYLHQDSRLRIIHRDLKASNVLLDDKLNPKISDFGMARSFGGDQIEGNTNRVVGTYGYMAPEYAVDGLFSIKSDVFSFGILLLEIICGNKNRALCHRNQTVNLVGYAWTLWKEGNALKLIDSRIKDSCVVSEVLHCIHVSLLCVQQYPEDRPTMTSIVQMLGSEKELVDPKEPGFFPRNVSDGGISGSNQNEISTNDELTITSLNGR. 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04989 859 ProSiteProfiles PAN/Apple domain profile. 341 421 IPR003609 -
Seca3g04989 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 16 140 - -
Seca3g04989 859 Pfam PAN-like domain 341 406 IPR003609 -
Seca3g04989 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 506 617 - -
Seca3g04989 859 Gene3D - 17 140 IPR036426 -
Seca3g04989 859 ProSitePatterns Protein kinases ATP-binding region signature. 548 570 IPR017441 GO:0005524
Seca3g04989 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 618 821 - -
Seca3g04989 859 CDD PAN_AP_plant 338 419 - -
Seca3g04989 859 MobiDBLite consensus disorder prediction 834 859 - -
Seca3g04989 859 Pfam D-mannose binding lectin 69 169 IPR001480 -
Seca3g04989 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 663 675 IPR008271 GO:0004672|GO:0006468
Seca3g04989 859 Gene3D Phosphorylase Kinase; domain 1 502 617 - -
Seca3g04989 859 MobiDBLite consensus disorder prediction 830 859 - -
Seca3g04989 859 CDD B_lectin 26 143 IPR001480 -
Seca3g04989 859 Pfam S-locus glycoprotein domain 202 320 IPR000858 GO:0048544
Seca3g04989 859 Gene3D Transferase(Phosphotransferase) domain 1 618 824 - -
Seca3g04989 859 SMART serkin_6 542 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04989 859 ProSiteProfiles EGF-like domain profile. 286 322 IPR000742 -
Seca3g04989 859 ProSiteProfiles Bulb-type lectin domain profile. 20 140 IPR001480 -
Seca3g04989 859 Pfam Protein tyrosine and serine/threonine kinase 543 813 IPR001245 GO:0004672|GO:0006468
Seca3g04989 859 SMART ntp_6 341 420 IPR003609 -
Seca3g04989 859 SMART blect_4 26 143 IPR001480 -
Seca3g04989 859 ProSiteProfiles Protein kinase domain profile. 542 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04989 859 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 5 804 - -
Seca3g04989 859 PIRSF SRK 1 859 IPR024171 GO:0004674
Seca3g04989 859 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 174 IPR036426 -
Seca3g04989 859 SUPERFAMILY Protein kinase-like (PK-like) 521 813 IPR011009 -
Seca3g04989 859 CDD STKc_IRAK 548 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04989 Seca-Chr3 97235054 97238607 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04989 478 838 Receptor kinase-like Gene Family AT4G23190 50.538 2.33e-119 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g04989 PK_Tyr_Ser-Thr 8.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04989 - - gmx:100812007 1141.33