Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04988 ATGGCCATTCTTTTTTTAATGATTATGATTGCTTACACGCTTTTTCCCTCTATAGCAATTAATTCAGTTAGTGTGTCTCTATCTCTAAGTGATGGCAAAACCTTAGTGTCCAAAGGTGGACATTTTGAACTCGGTTTCTTCAGTCCAGGAAATTCCCATAAACGTTACCTTGGAATTTGGTACAAGAATATCCCAATTCAAACAGTTGTTTGGGTTGCCAACAGAGACAAACCCATCAACAATACATCCGGCATCTTAACAATGAACAGCACAGGCAATCTTGTGCTGAGCCAGAATGATTCTGATTCTAGCACTGTTGTTTGGCACACAACCTCTCAAAAACAAGCACAGAATCCAGTGGCAGAGCTCTTGGACAGTGGCAATCTAGTTATAAGAAATGAGGGAGAAGCTGACAAAGAAGCTTACTTGTGGCAAAGCTTTGACTATCCATGTGACACTTTTCTGCCTGAGATGAAGTTGGGATGGGACCTCAAGAATGGTCTAGAAAGAAGATTAACATCTTGGAAGAGTCCAAATGATCCATCACCAGGAGAATTTTACAGGGGTTTAGTGCTCAATAATTACCCTGAGTTTTATCTCATGAATGGAACAGAGAAGTTCTTCCGGTTTGGACCATGGAATGGCCTCTATTTTAGTGGTACTCCATCTGTAGGGACTAACCCCTTTTTTGATACACAATATGTAAGCAAAAACAATTACATGTTTGTGTCCAATAAGGATGAGTTGTTCTACATGTATAGCCTCAAGAATAATTCTATACCCATCAGATCAGTAATAAATCAAACCAGTTATACCTATCAGGGCTTTTTATGGAACGAAGATACTCAAGCTTTTGAGAGTTTTCCACCAAACCCTGGTGACATATGTGACAAATATGGCCACTGTGGACCTAATGGGATCTGTAGAATTTCAGAATCTAAAGTCTGCCAATGCTTAGAAGGATACAGTTGGAAGGACTCACAGGATTGGACTCGAGGATGTGTCCGCAACAAACCGTTAACATGCAAAGACAAGCACAATGATTGGTTTGTCAAGTTGTTGAACTTGAAAGTTCCAGATACTTCACATACTTGGGTAGATGAGAATATGAATCTAGAGGAATGCAAAGAGAAGTGCTTGAATAATTGCTCTTGTACTGCTTGTGCTAATTCAGACATTAAAGGAACAGGAAATGGTTGTGTCTTGTGGTTTAGTGATCTAATTGACATCAAACAGTTTGAAGTTGGTGGACAAGATCTATATATTAGGATGCCTGCTTCAGAGAAAGCTTTTTATTCTTTTTTTTTAATTGATCATGGAGATGGAGAGCTTCAAAATGGCCACATTAGCAGTGGAGATGTAAAGCCTCATAATGGCCGCAAGAGGAACACAGCAACAATAGTTGTTACCACCATTGCTTCATTTTGTGGGATACTTTTGCTTTCTATTTACATTATCTATAAAGTCCGTAGAAACATTGCTGAGAAGTCAAAGAAAGAAGATGATGTTGATGATGACAGATGTGTAGATAAATTGGATCTCCCCTTGTTTGATCTGCAAACCATTCAAACTGCCACTAACAACTTCCTGATAAACAATAAGATTGGTAAAGGTGGTTTTGGACCTGTATATTGGGGAAAATTACCAGATGGGCAACAAATTGCTGTCAAGAGACTTTCAAGGAGCTCAAAACAAGGAATGACTGAGTTCATAAATGAAGTAAAACTAATTGCAAAACTTCAACACCGAAATCTGGTAAAGCTTCTTGGCTGTTGCATTCAGGGAGAAGAAAAATTGCTAGTTTATGAGTACATGGCTAATAGCAGCTTAGACTCTTTCATCTTTGATCATAGCAAAGGTAAATTGCTACAATGGCCTCATCGCTTCAATATAATACTTGGAATTGCTCGAGGCCTTCTGTATCTTCACCAAGATTCCCGATTGAGGATTATCCATAGAGATCTCAAATCAAGTAATGTTTTACTTGATGACAAATTAAATCCTAAGATATCAGATTTTGGAATGGCAAGAGCTTTTGGAGGAGACCAGACCGAAGGAAACACAGAGAGAGTAGTTGGAACATATGGATACATGGCACCAGAATATGCTGTTGATGGGCTATTTTCAATAAAATCTGATGTTTTCAGCTTTGGTATCTTATTATTGGAGGTTATAAGTGGGAACAGAAACAGAATTCTTTGTCATGCAAATGACACCTTAAACCTTGTTGGTTATGCGTGGACACTTTGGAAAGAGGACAAGGCTTTAGAATTGATTGACTCAAACATAAAGGAATCATGCACTAAGTCAGAAGTATTGCGTTGCATCAAGGTAAGTCTCTTGTGCGTGCAACAATATCCCGAAGATAGACCTACTATGACCTCAGTGGTTCAAATGTTAGGGAGTGAGATGGAAATTGCTGAGCCTAAAGAGCCTGGTTTCTTTCCAAAGAAGGTTTCCATTCTAACAGATTTACCCTTAAAACAAGATGGAATGAGCTCAGAGATCGAATTAACTAGTACTTCATTAAGTGGCAGGTGA 2541 0.3872 MAILFLMIMIAYTLFPSIAINSVSVSLSLSDGKTLVSKGGHFELGFFSPGNSHKRYLGIWYKNIPIQTVVWVANRDKPINNTSGILTMNSTGNLVLSQNDSDSSTVVWHTTSQKQAQNPVAELLDSGNLVIRNEGEADKEAYLWQSFDYPCDTFLPEMKLGWDLKNGLERRLTSWKSPNDPSPGEFYRGLVLNNYPEFYLMNGTEKFFRFGPWNGLYFSGTPSVGTNPFFDTQYVSKNNYMFVSNKDELFYMYSLKNNSIPIRSVINQTSYTYQGFLWNEDTQAFESFPPNPGDICDKYGHCGPNGICRISESKVCQCLEGYSWKDSQDWTRGCVRNKPLTCKDKHNDWFVKLLNLKVPDTSHTWVDENMNLEECKEKCLNNCSCTACANSDIKGTGNGCVLWFSDLIDIKQFEVGGQDLYIRMPASEKAFYSFFLIDHGDGELQNGHISSGDVKPHNGRKRNTATIVVTTIASFCGILLLSIYIIYKVRRNIAEKSKKEDDVDDDRCVDKLDLPLFDLQTIQTATNNFLINNKIGKGGFGPVYWGKLPDGQQIAVKRLSRSSKQGMTEFINEVKLIAKLQHRNLVKLLGCCIQGEEKLLVYEYMANSSLDSFIFDHSKGKLLQWPHRFNIILGIARGLLYLHQDSRLRIIHRDLKSSNVLLDDKLNPKISDFGMARAFGGDQTEGNTERVVGTYGYMAPEYAVDGLFSIKSDVFSFGILLLEVISGNRNRILCHANDTLNLVGYAWTLWKEDKALELIDSNIKESCTKSEVLRCIKVSLLCVQQYPEDRPTMTSVVQMLGSEMEIAEPKEPGFFPKKVSILTDLPLKQDGMSSEIELTSTSLSGR. 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04988 846 SMART blect_4 26 150 IPR001480 -
Seca3g04988 846 Pfam D-mannose binding lectin 68 176 IPR001480 -
Seca3g04988 846 Pfam PAN-like domain 342 410 IPR003609 -
Seca3g04988 846 CDD PAN_AP_plant 339 425 - -
Seca3g04988 846 SUPERFAMILY Protein kinase-like (PK-like) 515 814 IPR011009 -
Seca3g04988 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 605 808 - -
Seca3g04988 846 Pfam S-locus glycoprotein domain 208 323 IPR000858 GO:0048544
Seca3g04988 846 Gene3D - 19 147 IPR036426 -
Seca3g04988 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 17 147 - -
Seca3g04988 846 ProSiteProfiles EGF-like domain profile. 292 328 IPR000742 -
Seca3g04988 846 Gene3D Transferase(Phosphotransferase) domain 1 605 811 - -
Seca3g04988 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672|GO:0006468
Seca3g04988 846 Gene3D Phosphorylase Kinase; domain 1 488 604 - -
Seca3g04988 846 Pfam Protein tyrosine and serine/threonine kinase 531 800 IPR001245 GO:0004672|GO:0006468
Seca3g04988 846 SMART serkin_6 529 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04988 846 PIRSF SRK 1 846 IPR024171 GO:0004674
Seca3g04988 846 ProSiteProfiles PAN/Apple domain profile. 342 426 IPR003609 -
Seca3g04988 846 Gene3D Hepatocyte Growth Factor 341 421 - -
Seca3g04988 846 ProSiteProfiles Protein kinase domain profile. 529 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04988 846 CDD STKc_IRAK 535 800 - -
Seca3g04988 846 ProSiteProfiles Bulb-type lectin domain profile. 20 144 IPR001480 -
Seca3g04988 846 SMART ntp_6 345 424 IPR003609 -
Seca3g04988 846 CDD B_lectin 31 150 IPR001480 -
Seca3g04988 846 FunFam receptor-like serine/threonine-protein kinase SD1-8 499 604 - -
Seca3g04988 846 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 181 IPR036426 -
Seca3g04988 846 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 5 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04988 Seca-Chr3 97215079 97218949 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04988 478 817 Receptor kinase-like Gene Family AT4G23150 53.079 5.41e-121 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g04988 PK_Tyr_Ser-Thr 1.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04988 - - gmx:100812007 1065.06