Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04985 ATGGCGTTTCTTCAATCTTCAATGAGTATCATTGCTTGTATTCTACTTGTCTCTTCTCTTATAGTAGTTTCCATAGCGGGTGAGACATCATCCATTTCTCTGTCCCAGTCCATCACTGATGGAAAAACCATAGTTTCCCACACTGGAACCTTCGAACTTGGTTTCTTCACCCTCGGAGATCCCAAAAGATACTACCTTGGAATTTGGTTCAAGAACATTCCAGTCCGAAACATTGTTTGGGTTGCAAACGGTGGCCAACCCATCAATGACTCCTCTGCCATCTTGAAACTAGACAGTTCTGGCAATCTGGTCCTTACTCACAACAACAATATCGTTTGGGTGACAAATTCTTCTAGAAAAGCAGAGAAGCCAGTGGCAAAACTCTTGGATTCTGGAAATCTTGTGATAAGAGATGAGAATGAGAAGAGTGAAAATTATCTTTGGGAAAGCTTTGACTACCCATCTAATACAATGTTGCCAGGGATGAAGGTAGGATGGGATCTCAAGAGAAATCTGAATAGGCGTCTCACAGCATGGAAGAGTGATGATGATCCAACCCCAGGGGAACTTACTTGGGGTTTGGTTCTGTATCCCTATCCTGAAATCTATATGATGAATGGAGAAGAAAAGTACCACAGACTTGGTCCATGGAATGGCTTGCGTTTTACTGGCATGCCTGAGTTGAAGCCTAATTCTCTTTTTAATTACCAGTTTGTCTCCAATAAAGAGGAGGTTTATTACACATGGAGCCTCAAGGATAATTCTCTAACATCAAAAGTGGTACTTAACCAAACCAGTAAAGAACGTCCTCGCTATGTGTGGTCAAAGATGGACAAATTATGGATGCTTCATTCAACAATGCCAATAGACCTCTGTGATCATTATTATGGCCGATGTGGACCCAATGGATATTGCAGCATCACTAATTCACCAATGTGTGACTGCTTAAGAGGGTTCAAGCCTAAGTCTCCTGAAGCATGGAAGTCAATGGATTGGTCGCAAGGGTGTGTCCGGAATCCTCCATTAAACTGCAAAGATGATGGGTTTCTCCCAGTGGATGGCTTGAAATTGCCAGATACTAGTAATACTTCAGTGGATGAGACTATGAATCTACTGCAATGTAAAGCCAAATGCTTGAATAGTTGTACTTGCATGGCCTATACACATTCAAATATAAGCGGAGAAGGGAGTGGTTGTGTTATGTGGTTTGGTGATCTAATTGACATCAAAAAGTTTTCAGATGGTGGGCAGGTTCTATATATACGGATGCCTGCTTCAGAATTAGGGGACGGGCACAAGTGGAACTCGAGAATAATTTTTGTAACTGCTGCCTCTGTAGCTTCGGGAATGTTTTTACTTGCTATTTATTTTATCTTCAGATTCCAGAGGAGCAATGTTACTGGTAAATTTCCAGATAACTCAGATGAAAGACATGTGGATCATTTAGATCTCCCATTGTTTGATTTACAAACAATAATTATTGCCACTGACAACTTCTCAGAAAAGAACAAGATTGGAGAAGGTGGTTTTGGACCTGTATATTGGGGGAAATTAGCAGATGGGCTAGAAATTGCTGTAAAGAGACTTTCACAGAGCTCGGGACAAGGGATGAGTGAGTTCATAAATGAAGTAAAACTTATCGCAAATCTTCAACATCGAAATCTTGTAAAGCTTCTTGGTTGTTGCTTACAGAGACAAGAAAAAATGCTTATTTATGAATACATGGTTAATGGCAGCCTAGACTACTTCATTTTCGTTGTTATGAATTACGCAGATCATACCAAAGGTAAAGTTCTTGATTGGCCAAAGCGTTTCCACGTAATTTGTGGAATTGCTCGAGGGCTTATGTATCTTCATCAAGATTCTCGACTGAGGATTGTCCATAGAGATCTCAAAGCAAGTAATGTTTTATTAGATGATACTTTGAATCCGAAAATATCAGATTTTGGAATGGCTAGAATTTTTGGAGGAGAGCAAATTGAAGGAAATACAGATAAAATAGTTGGGACATATGGGTATATGGCACCAGAGTATGCTGTTGATGGGAAATTTTCAGTAAAATCTGATGTTTTCAGTTTTGGAATTTTACTATTGGAGATTATATGTGGGAAGAAAAATAGAGGACATTATCGTACAAAGCAAACCTATAACCTTGTCAATTATGTATGGACGTTTTGGAAAATAGGCAGTACTTTACAAATAATTGACTCAAACATAGAGGATTCATGCATTGAATCTGAAGCATTACGTTGCATTCATGTTGGACTCTTGTGTGTGCAACAATACCCAGAGGATAGGCCTACCATGACTGATGTGGTTTTAATGTTAAGGAGTGAGATGAAATTGGATGAGCCTAAAGAGCCAGGTTATTTTACAAAGAAGGATTCTATTGAAGCAATTTCAACCTCAAGTGGGAAGGATTCAAGTTCAAATAATGAAATGACAATAACCTTAAGTGTTCGTTAA 2466 0.3917 MAFLQSSMSIIACILLVSSLIVVSIAGETSSISLSQSITDGKTIVSHTGTFELGFFTLGDPKRYYLGIWFKNIPVRNIVWVANGGQPINDSSAILKLDSSGNLVLTHNNNIVWVTNSSRKAEKPVAKLLDSGNLVIRDENEKSENYLWESFDYPSNTMLPGMKVGWDLKRNLNRRLTAWKSDDDPTPGELTWGLVLYPYPEIYMMNGEEKYHRLGPWNGLRFTGMPELKPNSLFNYQFVSNKEEVYYTWSLKDNSLTSKVVLNQTSKERPRYVWSKMDKLWMLHSTMPIDLCDHYYGRCGPNGYCSITNSPMCDCLRGFKPKSPEAWKSMDWSQGCVRNPPLNCKDDGFLPVDGLKLPDTSNTSVDETMNLLQCKAKCLNSCTCMAYTHSNISGEGSGCVMWFGDLIDIKKFSDGGQVLYIRMPASELGDGHKWNSRIIFVTAASVASGMFLLAIYFIFRFQRSNVTGKFPDNSDERHVDHLDLPLFDLQTIIIATDNFSEKNKIGEGGFGPVYWGKLADGLEIAVKRLSQSSGQGMSEFINEVKLIANLQHRNLVKLLGCCLQRQEKMLIYEYMVNGSLDYFIFVVMNYADHTKGKVLDWPKRFHVICGIARGLMYLHQDSRLRIVHRDLKASNVLLDDTLNPKISDFGMARIFGGEQIEGNTDKIVGTYGYMAPEYAVDGKFSVKSDVFSFGILLLEIICGKKNRGHYRTKQTYNLVNYVWTFWKIGSTLQIIDSNIEDSCIESEALRCIHVGLLCVQQYPEDRPTMTDVVLMLRSEMKLDEPKEPGYFTKKDSIEAISTSSGKDSSSNNEMTITLSVR. 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04985 821 Pfam D-mannose binding lectin 78 180 IPR001480 -
Seca3g04985 821 ProSiteProfiles Bulb-type lectin domain profile. 29 149 IPR001480 -
Seca3g04985 821 SMART blect_4 35 154 IPR001480 -
Seca3g04985 821 CDD B_lectin 35 154 IPR001480 -
Seca3g04985 821 MobiDBLite consensus disorder prediction 801 821 - -
Seca3g04985 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Seca3g04985 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 575 784 - -
Seca3g04985 821 Pfam S-locus glycoprotein domain 213 323 IPR000858 GO:0048544
Seca3g04985 821 Gene3D Phosphorylase Kinase; domain 1 473 574 - -
Seca3g04985 821 Pfam PAN-like domain 344 409 IPR003609 -
Seca3g04985 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 185 IPR036426 -
Seca3g04985 821 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 767 - -
Seca3g04985 821 PIRSF SRK 1 821 IPR024171 GO:0004674
Seca3g04985 821 ProSiteProfiles PAN/Apple domain profile. 344 425 IPR003609 -
Seca3g04985 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 151 - -
Seca3g04985 821 CDD PAN_AP_plant 340 424 - -
Seca3g04985 821 SMART ntp_6 344 423 IPR003609 -
Seca3g04985 821 SMART serkin_6 499 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04985 821 FunFam receptor-like serine/threonine-protein kinase SD1-8 472 574 - -
Seca3g04985 821 ProSiteProfiles EGF-like domain profile. 288 325 IPR000742 -
Seca3g04985 821 Pfam Protein tyrosine and serine/threonine kinase 502 773 IPR001245 GO:0004672|GO:0006468
Seca3g04985 821 ProSiteProfiles Protein kinase domain profile. 499 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04985 821 CDD STKc_IRAK 505 776 - -
Seca3g04985 821 SUPERFAMILY Protein kinase-like (PK-like) 481 776 IPR011009 -
Seca3g04985 821 Gene3D - 24 151 IPR036426 -
Seca3g04985 821 Gene3D Transferase(Phosphotransferase) domain 1 575 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04985 Seca-Chr3 97123640 97128679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04985 438 807 Receptor kinase-like Gene Family AT4G23190 49.867 3.21e-122 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g04985 PK_Tyr_Ser-Thr 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04985 - - gmx:100808807 1165.98