Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04971 ATGGCGATGAGGGCAGCAGCGGCGGCAGCGCCCCGCGGTTTGAGACGGCTTTTCTGCACCAACTCAACCTCTTCTTCTCCTTCTTTCCCTTTCGTTCCAACGCCGCCTTCGGGGACAGCTCCCACTCGACAGATGGCGGAGCCCAGCACCAACCTCTTCGTCTCTGGGCTTAGCAAACGTACTACAACAGAAAGGCTACAGGAAGAATTTTCAAAGTTTGGTCAAGTTGTTCATGCTAGGGTGGTAACTGATCGAGTGTCAGGTTACTCTAAGGGGTTTGGATTTGTGAAATATGCTACTATAGAAGAGGCTGCTAAGGGCATTGAAGGGATGGATGGCAAGTTTTTGGATGGTTGGGTTATATTTGCAGAGTATGCAAGACCAAGACCACCACCGGGACAACAACCTGTAAATAATATGACCAATCAGTATGGCCGGCAGTAA 444 0.5 MAMRAAAAAAPRGLRRLFCTNSTSSSPSFPFVPTPPSGTAPTRQMAEPSTNLFVSGLSKRTTTERLQEEFSKFGQVVHARVVTDRVSGYSKGFGFVKYATIEEAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQQPVNNMTNQYGRQ. 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04971 147 SUPERFAMILY RNA-binding domain, RBD 28 139 IPR035979 GO:0003676
Seca3g04971 147 Gene3D - 20 136 IPR012677 -
Seca3g04971 147 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Seca3g04971 147 MobiDBLite consensus disorder prediction 127 147 - -
Seca3g04971 147 SMART rrm1_1 51 124 IPR000504 GO:0003723
Seca3g04971 147 MobiDBLite consensus disorder prediction 23 50 - -
Seca3g04971 147 FunFam RNA recognition motif-containing protein 30 141 - -
Seca3g04971 147 PANTHER NUCLEOLAR PROTEIN 8 33 133 - -
Seca3g04971 147 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04971 Seca-Chr3 96841678 96846688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04971 49 127 Eukaryotic Initiation Factors Gene Family AT4G34110 37.975 2.97e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04971 - - psat:127105180 232.261