Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04959 ATGGTCATTCTACCTTTGATACTTGTTATTGTCAAGTTACTTTCATTTCCATCCCAGATTTCCTCTGAAACTGATACTATTACCCAATTTCAGCCCCTCCCTGATGGAAAAACTTTGGTTTCACAGGATGGCACATTTGAGTTGGGCTTCTTCACTCCAGGTACGTCCTCTAGAAACCGCTACTTAGGAATCTGGTTCAAAAAAGTCTTAGTAAAAACAGTTGTTTGGGTCGCCAACCGTGACCATCCAATCAATGACAATTCAAGTTACCACTTGAGCATAACCAAAGAAGGAAACCTTGTCCTTCTCAGCAAGAACGGCGGCACAATTCATTGGTCAACAAATACAACAACAAAAACAAAAGGGAAAGGGTCAAGTTCAAGTAGTGTGATAGCGCAGCTCTTAGGCTCTGGCAATTTGGTTCTAAGAGAAGATAACAAAAAAGACATCAATGATAGCGAAGGTTACTTGTGGCAGAGCTTTGACTATCCTAGTGACACAATTTTACCAGGAATGAAGCTAGGATGGAACCTAACAAGTGGTCTTAATAGGCGCCTAACAGCTTGGAAGAACTGGGATGATCCATCTTCAGGTCACCTTACTTTTGGCTTCACAAGAAGAGAAAATGATCCTGAACAACAAATGTGGAATGGCTCATCAATGCTATACAGAAGTGGCCCTTGGAATGGCATTCGGTTCAGCGCTACACAATCATTGAAGCACCATCCATTGTTCCATGTAGATTTTGTGTACAAAAAGGATCAGTATTATTATTTCCAATATAACCCCTTAAATCCGTCATTGATTTCCAGAATTGTCATCAACCAAACCGATTATGCTCTTCAGCGCTTGACTTGGGCGGAAGAGAATCAAACATGGAAGCTGTATTTGAATGTTCCAAGAGACAAGTGTGACAACTATAACCGTTGTGGCTCATTCGGGAACTGTGATATAAGTGATACTAAGTCCCCAGTGTGCGAGTGTTTAAGTGGATTCACACCACAAAACAGAGACAGGAGTCAAGGATGCGTGCGCAGTGAAACTTGGAGGTGCAGAGAAAAGAATAAAGACGGTTTCATCAGATTTCAAAACTTGAAGCTCCCTGACACTAACAATTCATGGATTGATGCAAGTATAACACTTGAGGAATGCAAGGCCAAATGCTGGGAGAATTGTTCCTGTACGGCTTATGCAAACTCAGACATCACTGGAGCAGGAAGTGGTTGTATCATTTGGTTCGGTGATCTATTGGACTTGAGACAAGTGCCAAATGTTGGCCAAGATTTGTATGTTAGATTGGCTGCTGCCCCCAAAATAGATCCAGAAGGGAAAGGTGGCTCTAAGAAAACGATGGTAGTTGTGGTCGCAAGCATCGTTTCATCAATTTTTGTGATGCTTTCAATAACTTTCACCTTTATTTATTGGAGGAGCAATACCAAATTTAGAGAAACGAGGATCATCAAGACGAAAGTAAAGAAAAACGAAAGCCAGCAAGAAGATTTGGAACTGCCTTTGTTTGACCTCGACACAATAGTGTCTGCTACTGATGACTTCTCAAATGAAAAGAAGCTTGGTGAAGGTGGTTTTGGTCCAGTATATAGTGGTACATTACCTGATGGACAAGATGTCGCTATTAAAAGGCTTTCGAATAGCTCTGCACAAGGAATAAAAGAATTTAAGAATGAGGTTATATTTTGTTCTAAACTGCAACACCGAAACCTGGTTAAGGTCCTTGGCTTTTGCACTGAAGAGCAAGAGAAATTACTTGTCTATGAATATATGCCCAATAAAAGCTTAGATTTCTTTCTTTTTGATTCTTCTCAAAGAAAATTTCTAGACTGGTCTAGACGATTCAACATTATTAGTGGAATTGCTCGAGGGTTTCTTTACCTTCATCAAGACTCCAGATTTAGAATCATACATAGGGATTTAAAAGCAAGTAATATTTTATTAGATAATGATATGAATCCCAAAATTTCTGATTTTGGCTTGGCTAGGATGTGTGGAGGTGATCAAATTGAAGGGAACACAAGCAAAGTCGTTGGTACATATGGATATATGGCACCTGAATATGCAATTGACGGGATATTTTCCATCAAATCTGATGTATATAGCTTTGGAATTTTATTACTAGAGATTTTAAGTGGAAAAAAAAATAAACGACTTTCCTATTCAAGCAACAGCTACAATCTTATCCGGCATGCTTGGAGGTTATGGAAAGAGCGTGTCCCAATGGAATTCATTGATACATGTCTAGAGGACTTGTATATTCCATCAGAAGCCTTACGATGCATTCATATTGGTCTTTCATGTGTGCAACATCATCCTGATGATAGACCAAGTATGGCATCTGTGGTTGTAATGTTGACAAGTGAAAGTACTTTACCTCAACCAAAAGAGCCTATCTTCTTAATGGAAAAGGTCTCAGTTGAGGAAGAATCTACTTCTGGACAAAAGATGTATCATTCAACGAATGAAATAACCATTTCAGTGATGGAACCTAGATAG 2508 0.3939 MVILPLILVIVKLLSFPSQISSETDTITQFQPLPDGKTLVSQDGTFELGFFTPGTSSRNRYLGIWFKKVLVKTVVWVANRDHPINDNSSYHLSITKEGNLVLLSKNGGTIHWSTNTTTKTKGKGSSSSSVIAQLLGSGNLVLREDNKKDINDSEGYLWQSFDYPSDTILPGMKLGWNLTSGLNRRLTAWKNWDDPSSGHLTFGFTRRENDPEQQMWNGSSMLYRSGPWNGIRFSATQSLKHHPLFHVDFVYKKDQYYYFQYNPLNPSLISRIVINQTDYALQRLTWAEENQTWKLYLNVPRDKCDNYNRCGSFGNCDISDTKSPVCECLSGFTPQNRDRSQGCVRSETWRCREKNKDGFIRFQNLKLPDTNNSWIDASITLEECKAKCWENCSCTAYANSDITGAGSGCIIWFGDLLDLRQVPNVGQDLYVRLAAAPKIDPEGKGGSKKTMVVVVASIVSSIFVMLSITFTFIYWRSNTKFRETRIIKTKVKKNESQQEDLELPLFDLDTIVSATDDFSNEKKLGEGGFGPVYSGTLPDGQDVAIKRLSNSSAQGIKEFKNEVIFCSKLQHRNLVKVLGFCTEEQEKLLVYEYMPNKSLDFFLFDSSQRKFLDWSRRFNIISGIARGFLYLHQDSRFRIIHRDLKASNILLDNDMNPKISDFGLARMCGGDQIEGNTSKVVGTYGYMAPEYAIDGIFSIKSDVYSFGILLLEILSGKKNKRLSYSSNSYNLIRHAWRLWKERVPMEFIDTCLEDLYIPSEALRCIHIGLSCVQHHPDDRPSMASVVVMLTSESTLPQPKEPIFLMEKVSVEEESTSGQKMYHSTNEITISVMEPR. 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04959 835 Gene3D - 18 161 IPR036426 -
Seca3g04959 835 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 780 - -
Seca3g04959 835 Gene3D Hepatocyte Growth Factor 351 431 - -
Seca3g04959 835 CDD STKc_IRAK 524 790 - -
Seca3g04959 835 Pfam D-mannose binding lectin 73 190 IPR001480 -
Seca3g04959 835 ProSiteProfiles Protein kinase domain profile. 518 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04959 835 SMART serkin_6 518 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04959 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 482 593 - -
Seca3g04959 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 594 797 - -
Seca3g04959 835 PIRSF SRK 1 835 IPR024171 GO:0004674
Seca3g04959 835 Pfam Protein tyrosine and serine/threonine kinase 520 788 IPR001245 GO:0004672|GO:0006468
Seca3g04959 835 Gene3D Transferase(Phosphotransferase) domain 1 594 800 - -
Seca3g04959 835 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Seca3g04959 835 Pfam Domain of unknown function (DUF3403) 790 835 IPR021820 GO:0004674
Seca3g04959 835 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 195 IPR036426 -
Seca3g04959 835 ProSiteProfiles Bulb-type lectin domain profile. 24 155 IPR001480 -
Seca3g04959 835 ProSiteProfiles EGF-like domain profile. 300 338 IPR000742 -
Seca3g04959 835 SUPERFAMILY Protein kinase-like (PK-like) 501 802 IPR011009 -
Seca3g04959 835 SMART ntp_6 354 433 IPR003609 -
Seca3g04959 835 ProSiteProfiles PAN/Apple domain profile. 351 434 IPR003609 -
Seca3g04959 835 CDD B_lectin 31 164 IPR001480 -
Seca3g04959 835 Pfam PAN-like domain 351 419 IPR003609 -
Seca3g04959 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 161 - -
Seca3g04959 835 Pfam S-locus glycoprotein domain 223 336 IPR000858 GO:0048544
Seca3g04959 835 CDD PAN_AP_plant 352 434 - -
Seca3g04959 835 Gene3D Phosphorylase Kinase; domain 1 477 593 - -
Seca3g04959 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 350 433 - -
Seca3g04959 835 SMART blect_4 30 164 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04959 Seca-Chr3 96496161 96501570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04959 452 804 Receptor kinase-like Gene Family AT4G23190 51.261 4.90e-126 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g04959 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04959 - - gmx:100792537 1074.69