Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca3g04959 | ATGGTCATTCTACCTTTGATACTTGTTATTGTCAAGTTACTTTCATTTCCATCCCAGATTTCCTCTGAAACTGATACTATTACCCAATTTCAGCCCCTCCCTGATGGAAAAACTTTGGTTTCACAGGATGGCACATTTGAGTTGGGCTTCTTCACTCCAGGTACGTCCTCTAGAAACCGCTACTTAGGAATCTGGTTCAAAAAAGTCTTAGTAAAAACAGTTGTTTGGGTCGCCAACCGTGACCATCCAATCAATGACAATTCAAGTTACCACTTGAGCATAACCAAAGAAGGAAACCTTGTCCTTCTCAGCAAGAACGGCGGCACAATTCATTGGTCAACAAATACAACAACAAAAACAAAAGGGAAAGGGTCAAGTTCAAGTAGTGTGATAGCGCAGCTCTTAGGCTCTGGCAATTTGGTTCTAAGAGAAGATAACAAAAAAGACATCAATGATAGCGAAGGTTACTTGTGGCAGAGCTTTGACTATCCTAGTGACACAATTTTACCAGGAATGAAGCTAGGATGGAACCTAACAAGTGGTCTTAATAGGCGCCTAACAGCTTGGAAGAACTGGGATGATCCATCTTCAGGTCACCTTACTTTTGGCTTCACAAGAAGAGAAAATGATCCTGAACAACAAATGTGGAATGGCTCATCAATGCTATACAGAAGTGGCCCTTGGAATGGCATTCGGTTCAGCGCTACACAATCATTGAAGCACCATCCATTGTTCCATGTAGATTTTGTGTACAAAAAGGATCAGTATTATTATTTCCAATATAACCCCTTAAATCCGTCATTGATTTCCAGAATTGTCATCAACCAAACCGATTATGCTCTTCAGCGCTTGACTTGGGCGGAAGAGAATCAAACATGGAAGCTGTATTTGAATGTTCCAAGAGACAAGTGTGACAACTATAACCGTTGTGGCTCATTCGGGAACTGTGATATAAGTGATACTAAGTCCCCAGTGTGCGAGTGTTTAAGTGGATTCACACCACAAAACAGAGACAGGAGTCAAGGATGCGTGCGCAGTGAAACTTGGAGGTGCAGAGAAAAGAATAAAGACGGTTTCATCAGATTTCAAAACTTGAAGCTCCCTGACACTAACAATTCATGGATTGATGCAAGTATAACACTTGAGGAATGCAAGGCCAAATGCTGGGAGAATTGTTCCTGTACGGCTTATGCAAACTCAGACATCACTGGAGCAGGAAGTGGTTGTATCATTTGGTTCGGTGATCTATTGGACTTGAGACAAGTGCCAAATGTTGGCCAAGATTTGTATGTTAGATTGGCTGCTGCCCCCAAAATAGATCCAGAAGGGAAAGGTGGCTCTAAGAAAACGATGGTAGTTGTGGTCGCAAGCATCGTTTCATCAATTTTTGTGATGCTTTCAATAACTTTCACCTTTATTTATTGGAGGAGCAATACCAAATTTAGAGAAACGAGGATCATCAAGACGAAAGTAAAGAAAAACGAAAGCCAGCAAGAAGATTTGGAACTGCCTTTGTTTGACCTCGACACAATAGTGTCTGCTACTGATGACTTCTCAAATGAAAAGAAGCTTGGTGAAGGTGGTTTTGGTCCAGTATATAGTGGTACATTACCTGATGGACAAGATGTCGCTATTAAAAGGCTTTCGAATAGCTCTGCACAAGGAATAAAAGAATTTAAGAATGAGGTTATATTTTGTTCTAAACTGCAACACCGAAACCTGGTTAAGGTCCTTGGCTTTTGCACTGAAGAGCAAGAGAAATTACTTGTCTATGAATATATGCCCAATAAAAGCTTAGATTTCTTTCTTTTTGATTCTTCTCAAAGAAAATTTCTAGACTGGTCTAGACGATTCAACATTATTAGTGGAATTGCTCGAGGGTTTCTTTACCTTCATCAAGACTCCAGATTTAGAATCATACATAGGGATTTAAAAGCAAGTAATATTTTATTAGATAATGATATGAATCCCAAAATTTCTGATTTTGGCTTGGCTAGGATGTGTGGAGGTGATCAAATTGAAGGGAACACAAGCAAAGTCGTTGGTACATATGGATATATGGCACCTGAATATGCAATTGACGGGATATTTTCCATCAAATCTGATGTATATAGCTTTGGAATTTTATTACTAGAGATTTTAAGTGGAAAAAAAAATAAACGACTTTCCTATTCAAGCAACAGCTACAATCTTATCCGGCATGCTTGGAGGTTATGGAAAGAGCGTGTCCCAATGGAATTCATTGATACATGTCTAGAGGACTTGTATATTCCATCAGAAGCCTTACGATGCATTCATATTGGTCTTTCATGTGTGCAACATCATCCTGATGATAGACCAAGTATGGCATCTGTGGTTGTAATGTTGACAAGTGAAAGTACTTTACCTCAACCAAAAGAGCCTATCTTCTTAATGGAAAAGGTCTCAGTTGAGGAAGAATCTACTTCTGGACAAAAGATGTATCATTCAACGAATGAAATAACCATTTCAGTGATGGAACCTAGATAG | 2508 | 0.3939 | MVILPLILVIVKLLSFPSQISSETDTITQFQPLPDGKTLVSQDGTFELGFFTPGTSSRNRYLGIWFKKVLVKTVVWVANRDHPINDNSSYHLSITKEGNLVLLSKNGGTIHWSTNTTTKTKGKGSSSSSVIAQLLGSGNLVLREDNKKDINDSEGYLWQSFDYPSDTILPGMKLGWNLTSGLNRRLTAWKNWDDPSSGHLTFGFTRRENDPEQQMWNGSSMLYRSGPWNGIRFSATQSLKHHPLFHVDFVYKKDQYYYFQYNPLNPSLISRIVINQTDYALQRLTWAEENQTWKLYLNVPRDKCDNYNRCGSFGNCDISDTKSPVCECLSGFTPQNRDRSQGCVRSETWRCREKNKDGFIRFQNLKLPDTNNSWIDASITLEECKAKCWENCSCTAYANSDITGAGSGCIIWFGDLLDLRQVPNVGQDLYVRLAAAPKIDPEGKGGSKKTMVVVVASIVSSIFVMLSITFTFIYWRSNTKFRETRIIKTKVKKNESQQEDLELPLFDLDTIVSATDDFSNEKKLGEGGFGPVYSGTLPDGQDVAIKRLSNSSAQGIKEFKNEVIFCSKLQHRNLVKVLGFCTEEQEKLLVYEYMPNKSLDFFLFDSSQRKFLDWSRRFNIISGIARGFLYLHQDSRFRIIHRDLKASNILLDNDMNPKISDFGLARMCGGDQIEGNTSKVVGTYGYMAPEYAIDGIFSIKSDVYSFGILLLEILSGKKNKRLSYSSNSYNLIRHAWRLWKERVPMEFIDTCLEDLYIPSEALRCIHIGLSCVQHHPDDRPSMASVVVMLTSESTLPQPKEPIFLMEKVSVEEESTSGQKMYHSTNEITISVMEPR. | 836 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca3g04959 | 835 | Gene3D | - | 18 | 161 | IPR036426 | - | |
Seca3g04959 | 835 | PANTHER | BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN | 7 | 780 | - | - | |
Seca3g04959 | 835 | Gene3D | Hepatocyte Growth Factor | 351 | 431 | - | - | |
Seca3g04959 | 835 | CDD | STKc_IRAK | 524 | 790 | - | - | |
Seca3g04959 | 835 | Pfam | D-mannose binding lectin | 73 | 190 | IPR001480 | - | |
Seca3g04959 | 835 | ProSiteProfiles | Protein kinase domain profile. | 518 | 803 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca3g04959 | 835 | SMART | serkin_6 | 518 | 789 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca3g04959 | 835 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 482 | 593 | - | - | |
Seca3g04959 | 835 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 594 | 797 | - | - | |
Seca3g04959 | 835 | PIRSF | SRK | 1 | 835 | IPR024171 | GO:0004674 | |
Seca3g04959 | 835 | Pfam | Protein tyrosine and serine/threonine kinase | 520 | 788 | IPR001245 | GO:0004672|GO:0006468 | |
Seca3g04959 | 835 | Gene3D | Transferase(Phosphotransferase) domain 1 | 594 | 800 | - | - | |
Seca3g04959 | 835 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 639 | 651 | IPR008271 | GO:0004672|GO:0006468 | |
Seca3g04959 | 835 | Pfam | Domain of unknown function (DUF3403) | 790 | 835 | IPR021820 | GO:0004674 | |
Seca3g04959 | 835 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 74 | 195 | IPR036426 | - | |
Seca3g04959 | 835 | ProSiteProfiles | Bulb-type lectin domain profile. | 24 | 155 | IPR001480 | - | |
Seca3g04959 | 835 | ProSiteProfiles | EGF-like domain profile. | 300 | 338 | IPR000742 | - | |
Seca3g04959 | 835 | SUPERFAMILY | Protein kinase-like (PK-like) | 501 | 802 | IPR011009 | - | |
Seca3g04959 | 835 | SMART | ntp_6 | 354 | 433 | IPR003609 | - | |
Seca3g04959 | 835 | ProSiteProfiles | PAN/Apple domain profile. | 351 | 434 | IPR003609 | - | |
Seca3g04959 | 835 | CDD | B_lectin | 31 | 164 | IPR001480 | - | |
Seca3g04959 | 835 | Pfam | PAN-like domain | 351 | 419 | IPR003609 | - | |
Seca3g04959 | 835 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 20 | 161 | - | - | |
Seca3g04959 | 835 | Pfam | S-locus glycoprotein domain | 223 | 336 | IPR000858 | GO:0048544 | |
Seca3g04959 | 835 | CDD | PAN_AP_plant | 352 | 434 | - | - | |
Seca3g04959 | 835 | Gene3D | Phosphorylase Kinase; domain 1 | 477 | 593 | - | - | |
Seca3g04959 | 835 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 350 | 433 | - | - | |
Seca3g04959 | 835 | SMART | blect_4 | 30 | 164 | IPR001480 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca3g04959 | Seca-Chr3 | 96496161 | 96501570 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca3g04959 | 452 | 804 | Receptor kinase-like Gene Family | AT4G23190 | 51.261 | 4.90e-126 | 389 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_DLSV | Seca3g04959 | PK_Tyr_Ser-Thr | 1.4e-48 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca3g04959 | - | - | gmx:100792537 | 1074.69 |