Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04953 ATGGACTTTAATAGTGATGATTCAGCTGTTAATCTGGATGATGATAGGGACGTAAGTTATAGTGACTCTTCTAGAAGTCATGAAATGACTAGTGGAAATGATATACATAGTGATGAGGGAAATGAGTCTATTCACCCAGAGGCTGATATGGATGAGGAGAATTATGTTATGGATACTGATGTTAGAGACGGTGTGTCAAGGAGGATAATTGACTTGACAAATTATGATATAAGGGCTTTGGAGTTCGCTAGTCAAGAGCATGCGTACAATTTTTACTTTTCTTATGCAAAATGTAAAGGATTTGCTATGAGGAAGGATGATGTTATTCGTGACAAAAAAGGGATGGTCATAATGCGGCAGTATTTATGTAGTAGGGCTGGTCTGAGGGACAAAAAGCATCTGATTAGGTTAGATCGAAAAAAGGAACACAGACCCCTTACCCGTACCAATTGTCTAGCAAAGTTGAGAGTTAGGTTTGATTACAAAACGGGTAAATGGAAGGTTGTTTCATTTGAAGAATCTCACAACCATGATTTAACCCCTGCAAAGTTTGTACCTCTAATTCCTAATTATAGGGGATTGACTGATGGGGACAAAGCCCAAGTGGATGCATTACATTCTCATGGCATTAGGCCTTGCCAGATTATGGGTTTTCTTGTTGATCAAAAAGGAGGGTATAGAAATGTTGGATTTTCAAAGAAAGATTTGTACAACTACATAGATGAGGTTAAACGTGGTAAGATAAAAGATGGGGATGTTTTTGCTGGCTTAAGTTATTTGCAAGGAAAGGCGGATAATAATCCAATGTTTTTTTCAAGATTTTTATGTTCTGAGGATGGTAAACTTACTCATCTATTCTGGTGTGATGCAAATAGTCGTGCGAATTTTCAATTTTTTGGGGATGTGCTCGCATTTGATGCAACATACAAGAAGAACATATATAAGTATCCATTGGTGATATTTTCTGGGAAAAATCATCACTCTCAAACAGTGATATTTGGGTGTGCACTCATTGCTGATGAAACAATTGATACTTATAAGTGGGTGCTAAGGATGTTTTTGGAAGCAATGTTCAACAAGCATCCAGCAGCAGTGGTGACTGATGGAGATGGTTCTATGAGGGAAGCTATTAAGGCAGTATTTCCAAATGCCTCTCATAGGTTATGTGGGTGGCATTTGAATAAGAATGCATGTGAAAATGTTAAGAATCCAAAATTTTTGGATGATTTCAAGAAAGCAATGTATAGTAATTTCACTCCAAATCAATTTGAAGAGTTTTGGGAGGAAATGGTTACCAAACATGGTCTACAAGGTAATAGGTGGGTTAAGAAAACCTATGATATCAAGGAAATGTGGGCCTCTGCCTATTTACGTGACAAATTCTTTGCTGGCATAAGAACGACATCTCAATGTGAAGGAATTAATTCACTAATAAAGGCTTATGTTAGGAGTAAGAATACTATTATAGAATTTATTCATAATTTTGAACATGCTCATAGGGAATATAGGTACAAAGAATTGTGTTCTGGCTTTAATTCTATTTATTTTGAACCTGTTCTTACTACCTCACTTCAGAAGATAGAGCGTCAAGCTTCTAAGGTGTTCACTTTGGATATTTTTAAAGATGTCAAGTATGAGATTGAAAGGGCAGGTGGTTTAAATGTAATTGAGCGTTCAATTGAAGGGGATAATGTTTTATTCAAATTAAATGAATATTGTAAGCCTCGTAGTGAACGCTTTGTTGTTTATGATAAAGAGAATTCTAAATTTGTTTGTGATTATCGGATGTTTGAATCTTGTGGCATTCCATGTCGACATATTTTTTGTGCTATGAGACTGGAGCACATAGATGCTATACCCCCATGTATGATTTGCAACCGATGGAGGAAGGATGTTAAGAGTGACTTCATGATATCAGATGGTTTGGATGAGGTAGAACCTGACATGATGAGGGTTTGCCGTTTTGTGGTTGCTAGCTCTCATTGTAACAATCTTTGTGACATGGTTTCCCAAAAGCGTGAGCATTTTAAGGAGTTTATAAATGACATTATGAAGCTGAAACAGAAGTATGAGAGATTGTCTTCTAGTAGTAGCACAACTAATGTTGAGGAAAATGTTGTACAAGATCCCACAGTTGTGAAGACGAAAGGTGCTCCTATGAAGACAAGGAAGAGGCGTAAGAATAAGAGGTGTTCAAACTGTAACATTTCTGGACATGTTATCATAACCTGTCCTAGGTTGTTTCCACCAGAAGTTGATGAAGTCAACATTAATGAAGAAGACCATGGTCCTGAATCACAAACTGTTAGGAGGGATGCTGCCCAAGTAATTTCCTAG 2337 0.3706 MDFNSDDSAVNLDDDRDVSYSDSSRSHEMTSGNDIHSDEGNESIHPEADMDEENYVMDTDVRDGVSRRIIDLTNYDIRALEFASQEHAYNFYFSYAKCKGFAMRKDDVIRDKKGMVIMRQYLCSRAGLRDKKHLIRLDRKKEHRPLTRTNCLAKLRVRFDYKTGKWKVVSFEESHNHDLTPAKFVPLIPNYRGLTDGDKAQVDALHSHGIRPCQIMGFLVDQKGGYRNVGFSKKDLYNYIDEVKRGKIKDGDVFAGLSYLQGKADNNPMFFSRFLCSEDGKLTHLFWCDANSRANFQFFGDVLAFDATYKKNIYKYPLVIFSGKNHHSQTVIFGCALIADETIDTYKWVLRMFLEAMFNKHPAAVVTDGDGSMREAIKAVFPNASHRLCGWHLNKNACENVKNPKFLDDFKKAMYSNFTPNQFEEFWEEMVTKHGLQGNRWVKKTYDIKEMWASAYLRDKFFAGIRTTSQCEGINSLIKAYVRSKNTIIEFIHNFEHAHREYRYKELCSGFNSIYFEPVLTTSLQKIERQASKVFTLDIFKDVKYEIERAGGLNVIERSIEGDNVLFKLNEYCKPRSERFVVYDKENSKFVCDYRMFESCGIPCRHIFCAMRLEHIDAIPPCMICNRWRKDVKSDFMISDGLDEVEPDMMRVCRFVVASSHCNNLCDMVSQKREHFKEFINDIMKLKQKYERLSSSSSTTNVEENVVQDPTVVKTKGAPMKTRKRRKNKRCSNCNISGHVIITCPRLFPPEVDEVNINEEDHGPESQTVRRDAAQVIS. 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04953 778 SMART 26again6 590 617 IPR006564 GO:0008270
Seca3g04953 778 MobiDBLite consensus disorder prediction 9 51 - -
Seca3g04953 778 Pfam MULE transposase domain 302 396 IPR018289 -
Seca3g04953 778 Pfam FAR1 DNA-binding domain 90 180 IPR004330 -
Seca3g04953 778 PANTHER OS01G0519700 PROTEIN 79 726 - -
Seca3g04953 778 MobiDBLite consensus disorder prediction 1 51 - -
Seca3g04953 778 MobiDBLite consensus disorder prediction 758 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04953 Seca-Chr3 96120898 96123234 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g04953 MULE 1.3e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04953 - - ccaj:109792835 827.009