Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04951 ATGGACTCAAAGCAGTTTTTTAGTTTCAGTGTGACTAGTTCAGCAGGAGTACCTTACTCATCATCTTATCCTACCATCTCACCAATACACAACCGGCTGCTTGGATCCTTGAAGCTTGACACAGGAAGCTCACCTAATTCAGCACTTTCAACTCATTTTGATTCTGACACTCTTTCTTCACTGAGTGACAGCCAGGAGCAGCACAGCTCTAGGGAATCCCTCTCTGGTGCCAGCCCTTCTTGTAACTCTTTGCTAGAAAGCAATCTCCATTTGCATAGGCCAGTCCCTCTCCAAGACAGTTTGCATCTATCTGCTAGGAGCTCTCTTCCACAGGGTACAAGTTGTTACAATGAAACCAGACACGCATTGCTGGAACTAGAAACTGCTTTGATGGCACATGATGGTGGTGATGATGAAGTTACCACATCAAATACTTCTTTGTGTGGTAGCAGCAGGCCAACCTCATCTAGCCAAAGAAATATGTTCTGGAGCCATGATCCCCAAAGGTCAGAATATATTCAAAGTGAAATTGCACGTGTAGAGAAACGTCACAAATCAATGGAGGAAGCATCTTCATCACTACAAGGCCTCCCATCAAGCAATTTGAAACAGTTACTGATTCTATGTGCCAAAGCCCTGTCTGAAAACAACATGAAAGATTTTGATCAATTGATAGAAAAGGCTAAACGTGCTGTGTCCATAAGTGGGGAGCCAATACAACGGCTTGGTGCTTATTTGGTAGAAGGTCTTGTTGCGAGGAAGGAGGCATCAGGGAATAACATCTACCGTGCCCTTAGATGCAGAGAGCCTGAGGGCAAAGACTTACTCTCTTACATGCAGCTACTGTATGATGTCTGCCCATACTTCAAATTTGGTTACATGGCTGCAAATGGGGCTATTGCTGAAGCTTGCAGAAATGAGGATCACATTCACATCATAGACTTCCAAATTGCTCAGGGAACTCAATGGATGACTCTCCTCCAAGCTCTTGCAGCAAGACCTGGTGGGGCTCCACATGTGAGGATCACTGGGATTGATGATCCTGTTTCTAGATATGCTCGTGGTGATGGACTAGAGGCAGTTGGGAAAAAATTGGCCATAATCTCTCAGAAATTTAACATCCCAATTGAGTTCCATGGTGTGCCTGTTTTAGCTCCAAATGTGACAAGGGACATGCTTGATGTTAGGCCTGGAGAGGCTTTGGCTGTGAACTTTCCTTTGCAACTGCATCACACTGCTGATGAGAGTGTTGATATGAGTAATCCAAGGGATGGACTTCTAAGAATGGTGAAATCACTTTCTCCTAAGGTAGTTACATTAGTGGAGCAGGAATCAAACACCAATACAACTCCTTTCTTCAACAGGTTTATAGAAACCTTGGATTACTACTTGGCAATGTTTGAGTCCATTGATGTCACACTCCCAAGGAAGAGCAAGGAGAGGATTAATGTGGAGCAACATTGTTTGGCAAGGGATATTGTCAACATCATTGCTTGTGAAGGGAAGGAAAGAGTAGAGCGACATGAACTGTTTGGCAAGTGGAAGTCTAGGTTGACAATGGCTGGCTTCCATCAATATCCTTTGAGTTCTTATGTGAATTCTGTTATAAGAAGTCTGCTGAGGTGCTATTCAGAACATTATAGTCTTGTGGAGAAGGATGGGGCCATGTTATTGGGATGGCAAAACAGAAATTTGATATCAGCTTCAGCCTGGCATTGA 1719 0.438 MDSKQFFSFSVTSSAGVPYSSSYPTISPIHNRLLGSLKLDTGSSPNSALSTHFDSDTLSSLSDSQEQHSSRESLSGASPSCNSLLESNLHLHRPVPLQDSLHLSARSSLPQGTSCYNETRHALLELETALMAHDGGDDEVTTSNTSLCGSSRPTSSSQRNMFWSHDPQRSEYIQSEIARVEKRHKSMEEASSSLQGLPSSNLKQLLILCAKALSENNMKDFDQLIEKAKRAVSISGEPIQRLGAYLVEGLVARKEASGNNIYRALRCREPEGKDLLSYMQLLYDVCPYFKFGYMAANGAIAEACRNEDHIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSRYARGDGLEAVGKKLAIISQKFNIPIEFHGVPVLAPNVTRDMLDVRPGEALAVNFPLQLHHTADESVDMSNPRDGLLRMVKSLSPKVVTLVEQESNTNTTPFFNRFIETLDYYLAMFESIDVTLPRKSKERINVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLTMAGFHQYPLSSYVNSVIRSLLRCYSEHYSLVEKDGAMLLGWQNRNLISASAWH. 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04951 572 MobiDBLite consensus disorder prediction 135 162 - -
Seca3g04951 572 Pfam GRAS domain family 202 571 IPR005202 -
Seca3g04951 572 MobiDBLite consensus disorder prediction 45 79 - -
Seca3g04951 572 Coils Coil 211 231 - -
Seca3g04951 572 MobiDBLite consensus disorder prediction 138 162 - -
Seca3g04951 572 ProSiteProfiles GRAS family profile. 193 572 IPR005202 -
Seca3g04951 572 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 173 568 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04951 Seca-Chr3 95975793 95977511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04951 96 571 GRAS Transcription Factor Family AT5G48150 54.959 2.73e-180 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g04951 GRAS 4.6e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04951 - - gmx:100775665 903.279