Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04946 ATGAGAGAGGAGTCAATAGGACTGATTATTGGAGTATCCATAGGTGTTGTAATTGGCATTGTTTTGGCAATTTTTGCAGTCTTCTGTCATAGGTGCCATCGAAAGCGTTCACAGATAGGCAATAGCAGTTCCAGGAGGGCTGCTACCATACCCATCCGCACAAATGGTGCTGACTCTTGTACTATTCTGTCAGACTCAACCATAGGTCCAGAGTCACCTGTAAAATCAGGACGCAATGGCATGTCCTTTTGGCTTGATGGGTTTAAGAAGAGTAACAACACGGTTTCAGCATCTGGACTACCTGAATATGCATACAAGGATTTGCAGAAGGCAACATATAATTTTACAACAGTCATAGGACAAGGTGCTTTTGGTCCTGTTTATAAAGCTCAGATGCCTACTGGTGAGACTCTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCACACAGAGCAGGTTGTGTTATTGGGAAGGTTACACCATAGAAATCTGGTGAATTTGATAGGATATTGCGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGCAAGGGTAGCTTGGCTTCGCACCTGTATTATCCAGGTGATGTGAATGAAGCACTGTGCTGGGATTTGAGGGTTCACATAGCTTTAGATGTAGCAAGAGGCTTGGAGTATCTTCATGATGGGGCAATTCCTCCTGTAATCCATCGAGATATAAAATCTTCCAATATTCTGTTAGACCAATCCATGCGAGCCAGGGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTAGATAAACATGCAGCTATTCGGGGTACCTTTGGTTACCTTGACCCCGAGTACATATCTTCAGGAACATTCACAAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAAATTATAGCTGGCAGAAACCCACAGCAGGGTCTAATGGAATATGTTGAGCTTGCAGCAATGAATACTGAGGGAAAAGTTGGTTGGGAGGAGATTGTGGATTCTCACCTTGAAGGAAACTTTGATGTGCAAGAACTGAATGAAGTGGCAGCACTTGCCTATAAATGCATCAACCGTGCCCCAAGTATGCGCCCTTCTATGAGGGACATAGTACAAGTGTTAACAAGGATCCTTAAATCAAGGTACCATAAAAATCATCATAAGAATGCCTTGTCAGCCACAGCAGATGAAGTATACATTGATCCTGATCAGCTAGAAAGCAAGATTTCTGTTGCAGATCACCACCAGAGAGAAGAATCTATGGAGAGTGCAGTAGACACATATGAAGTGTAG 1305 0.4253 MREESIGLIIGVSIGVVIGIVLAIFAVFCHRCHRKRSQIGNSSSRRAATIPIRTNGADSCTILSDSTIGPESPVKSGRNGMSFWLDGFKKSNNTVSASGLPEYAYKDLQKATYNFTTVIGQGAFGPVYKAQMPTGETLAVKVLATNSKQGEKEFHTEQVVLLGRLHHRNLVNLIGYCAEKGQHMLVYVYMSKGSLASHLYYPGDVNEALCWDLRVHIALDVARGLEYLHDGAIPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFEIIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSHLEGNFDVQELNEVAALAYKCINRAPSMRPSMRDIVQVLTRILKSRYHKNHHKNALSATADEVYIDPDQLESKISVADHHQREESMESAVDTYEV. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04946 434 FunFam calcium/calmodulin-regulated receptor-like kinase 1 190 400 - -
Seca3g04946 434 CDD STKc_IRAK 119 381 - -
Seca3g04946 434 ProSiteProfiles Protein kinase domain profile. 113 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04946 434 Gene3D Transferase(Phosphotransferase) domain 1 190 404 - -
Seca3g04946 434 Gene3D Phosphorylase Kinase; domain 1 83 189 - -
Seca3g04946 434 SUPERFAMILY Protein kinase-like (PK-like) 93 378 IPR011009 -
Seca3g04946 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Seca3g04946 434 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 86 189 - -
Seca3g04946 434 SMART serkin_6 113 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04946 434 Pfam Protein tyrosine and serine/threonine kinase 115 378 IPR001245 GO:0004672|GO:0006468
Seca3g04946 434 PANTHER OS01G0750732 PROTEIN 5 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04946 Seca-Chr3 95905182 95910335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04946 22 433 Glycoside Hydrolase AT3G07070 36.534 1.14e-71 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Seca3g04946 PK_Tyr_Ser-Thr 9.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04946 - - gmx:100785634 734.561