Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04942 ATGCCAACAGTGTGGTTCTCTCTCAAGAAGTCTCTACACTGCAAATCAGAACCATCTGATGTTCATGACCCAAAATCAAGGAAGCATTTGAGCACAATCTTGACCAAAAGAGCAGGAAGGTCAGGGTGTTCTAGGTCCATAGCAAATCTCAAAGATGTTATCCATGGAAGCAAGAGGCATCTTGATAAGCCACCAAGTTGCAGTCCAAGATCCATAGGGAGTAGTGAGTTCCTCAACCCCATAACCCATGAAGTGATTTTGAGTAACTCAAGGTGTGAGCTGAAAATCACTGGATATGGAGGATTCCAAGAAGGGGTTGGCAGTGGTGGTGGAGGTGGTAACAATGGTGGTGGTAGTGGTGGTTCTACTTTTGTGGGTACTTTGAGGCCTGGGACTCCTGGTCCTGGAGGGAACCCCACAATGCATTACTTTAACCCCTCTTTTAGGACTTCATCCACTCCTCCAAGGAAATCTCCTCTCCTTTTATCAGACAAAGAAGGGTCTGGTCCTCATGGTGCTGGAGTTGGACTTTATTCAAGCAATAGGTTGTCCCTTGAAACAGATTCCAATGGGTCTTCAACAATGACTTGCCACAAATGTGGAGAGCAATTTAACAAATGGGAAGCTGCTGAAGCTCATCATCTGTCCAAACATGCTGTTACTGAACTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATTATTTGCAGGACAAGCTGGTTGAAGTCTGAGAACCAGTGTGGTAGAATTGAGAGAGTTTTGAAGGTCCACAACATGCAAAAGACTCTGGCTAGATTTGAAGAGTACAGGGAAATGGTGAAAATCAAAGCCAGCAAACTCCAAAAGAAGCATCCTAGGTGCCTGGCTGATGGGAATGAGCTTTTGAGGTTCTATGGCACCACTGTTGCATGCTCTCTTGGTCTCAATGGCTCTTCTAGTCTCTGCCTATCAGAAAAATGTTGTGTTTGTAGAATAATCAGGAATGGTTTTTCTGCCAAGAAGGAACTCAAGGGTGGCATAGGTGTTTTCACAACATCCACAAGTGGAAGAGCTTTTGAAACTATAGAGATTTCTGGTAATGAACAATCACTAAGAAAAGCACTTATAGTTTGCAGAGTAATTGCTGGCAGGGTTCATAGACCACTGGAGAACATTCAGGAAATGGCATCTCAGACAGGGTTTGACTCATTGGCTGGGAAAGTAGGTCTTTATTCAAATATTGAGGAGCTTTATTTACTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTAATTTGCAAACCTTGA 1290 0.4357 MPTVWFSLKKSLHCKSEPSDVHDPKSRKHLSTILTKRAGRSGCSRSIANLKDVIHGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGVGSGGGGGNNGGGSGGSTFVGTLRPGTPGPGGNPTMHYFNPSFRTSSTPPRKSPLLLSDKEGSGPHGAGVGLYSSNRLSLETDSNGSSTMTCHKCGEQFNKWEAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCLSEKCCVCRIIRNGFSAKKELKGGIGVFTTSTSGRAFETIEISGNEQSLRKALIVCRVIAGRVHRPLENIQEMASQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04942 429 Gene3D - 220 428 - -
Seca3g04942 429 MobiDBLite consensus disorder prediction 110 176 - -
Seca3g04942 429 ProSitePatterns Zinc finger C2H2 type domain signature. 197 218 IPR013087 -
Seca3g04942 429 FunFam C2H2-like zinc finger protein 219 428 - -
Seca3g04942 429 SUPERFAMILY ADP-ribosylation 220 428 - -
Seca3g04942 429 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 427 - -
Seca3g04942 429 MobiDBLite consensus disorder prediction 143 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04942 Seca-Chr3 95861364 95863717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04942 1 429 C2H2 Transcription Factor Family AT5G54630 68.467 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g04942 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04942 - - gmx:100787790 755.362