LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g04937	ATGGTTGCCGTAAAGTTTAGCTTTTGTGTTCTTTTGATTGTTCTTCTTGTAGCAGCAGTAAGCTTTATAGAAAAGAAGGAAACACATGAAGAGTTTGTTAGCGAACTACTTGATTCAGCATCTGGATTGTTAGATGAGCACACGGCAAAGGTACTATGGACCACTTGCTGGGAAGATTCAATTCGCTTAAAGAAAGAGGTTGAAGATCATGATTTACGCCTCCCTCAGGAATCATCTGGTAGCACCAATAGAATTAGTTCAGAGATTCAACCATTTGCACCAGCAGACATCCAAAAATTGATTGCTTGCCATCCTCAGTTCAAGGAAAACTTTATTCAGTGTTTGAGAAAAAGTAATCTTCCATTTCATGTATCAGGAGAAGAGGATGATTCCAAGATATGGCATGTCACTTATATGGGATCACTTTTTTCGAAATCCAGTGTTCCTCGAAGAAATGAAGATAAGCATAGTAACAGAAGAACAGTTGTTATTGCTGTAGTTATAACTGCATTGGTGACATTCATAGCTGCAACCTTGTTCTTTTTATACTGTAGTGGGTTTTGTAAGATGGGCCGAGTTAGGAAAAATGATGAGAGGCCCCTTCTCAGCTTGAGTCCTTCCAATTATTCTTTTGGAAATTCAATAAAAGGGGAGAAAGTTGGGTTTCAGTCATCAAATGATAATTTACTAGACAACAAGAAGACTTCAGTGCAAGAAAGTCAATCAATAGGAGCTCTTACTACTGCCGGATCACCATTTGAACTGAAACCTCCTCCCGGGAGAGTGGGAACCATTCCTTCTGGAATGCCTCCTTTAAAACCTCCTCCTGGAAGGCTGAATCCTCTTCCCCTGAACCACCCCTCAGCACCAACTAGTACCAGGCCTGGTCCTCCTCCACCACCACCGCCAGCACCAGCTGGTGCCAAACCTGGTCCTCGTCCACCACCACCCCCAGCACCAGCTGGTGCCAAACCTGGTCCTCCTCCTCCACCACCCACAGCTCCAGCTGGTGCCAAACCGGGTCCTCCTCCACCACCACCACCAGCACCAATTGGTGCTAAACCTGGTCCTCGTCCACCACCTCCTCCTAAGAGTGGTATAGGTCCTCCTCGACCTCCTCCTCCAATTGGCCCTAAGGTAGCTCGGCCTTTAGCAAATGTTGAGGCTGAGGCAGAAGGTGAAGCTGGTGCTCCTAAAGCCAAGCTAAAGCCTTTCTTCTGGGATAAGGTTCAAGCTAACTCGAATCATTCAATGGTTTGGAATCAGATCAAATCAGGATCATTCCAGTTTAATGAAGAGATGATAGAGACATTTTTTGGCTATAATGTTGTGGATAAAAACAACGGTCAACGGCAGAAAGAGTCTACCTCTCAAGACCCTTCACCTCAATATATCCAGATCATCGACAAAAAGAAATCGCAAAATTTATTAATTTTGTTGCGAGCATTGAACGTGACAATGGAAGAAGTTTGTGATGCACTTTATGAAGGAAATGAGCTACCCTCAGAATTTCTTCAAACCTTGCTGAAGATGGCACCAACATCAGATGAAGAACTTAAGCTTAGACTTTTTAGTGGTGAGCTGTCTCAACTTGGGCCTGCAGACCGATTCCTGAAAGCCTTGGTTGACATTCCGTTCGCTTTTAAGCGAATGGAAGCACTGCTTTTCATGAGTACACTTAATGAGGAGCTCACTATTACTATGGAGTCTTTTGCAGTTTTAGAGGTTACTTGTAAGGAACTAAGAAACAGCAGGCTGTTCCTCAAGCTTCTTGAAGCTGTTCTCAAAACTGGCAACCGTATGAATGATGGAACATACCGTGGTGGTGCACAGGCATTTAAACTTGATACACTTCTAAAATTATCTGATGTAAAAGGAACAGATGGCAAAACTACACTCTTACACTTTGTTGTTCAAGAGATTATCCGCTCTGAGGGCATAAAAGCCGCTCGAGCTGCAAAAGAGAGCAAGAGTTCATCTAGTATTAAAACAGATGAAACAGAAGATCACTACCGTGAAATTGGTCTTCAGGTGGTTTCACACTTAAGCAGTGAGCTTGAGAATGTTAAAAAAGCAGCAATTCTAGATGCTGACAGCTTAACAGCAACTGCTTCCAAACTTGCTCATGGTCTCATAAAAACCAAAAACTTGGTAAATGAAAACATGAAAAATGTGGAGGAAGATAGAGGGTTTTGTGAGACAACAAAAAGTTTTGTGCAGAATGCTGAGATTGATGTTATGAAATTGATGGAAGAAGAGAAGAAAATCATGGCTTTGGTGAAGAGCACTGGTGATTACTTTCATGGGAATGCTGGGAAGGATGAAGGCTTAAGATTGTTTGTAGTAGTAAGAGACTTCTTAATAATGCTAGATAAGGTATGCAAGGAAGTGAGAGAAGCACAGAAGAGAGCAACAAAAACTCTAAAACAAGAAACTTCTCGAGGATCATCTTCGTCTGAAACGCGTCCACCACCTTCTGATTTTCGTCAGCGGCTTTTTCCGGCGATAGCTGAAAGGAGGATGGGTGACACTAGTTCAGATGATGAGAGTCCATAG	2556	0.428	MVAVKFSFCVLLIVLLVAAVSFIEKKETHEEFVSELLDSASGLLDEHTAKVLWTTCWEDSIRLKKEVEDHDLRLPQESSGSTNRISSEIQPFAPADIQKLIACHPQFKENFIQCLRKSNLPFHVSGEEDDSKIWHVTYMGSLFSKSSVPRRNEDKHSNRRTVVIAVVITALVTFIAATLFFLYCSGFCKMGRVRKNDERPLLSLSPSNYSFGNSIKGEKVGFQSSNDNLLDNKKTSVQESQSIGALTTAGSPFELKPPPGRVGTIPSGMPPLKPPPGRLNPLPLNHPSAPTSTRPGPPPPPPPAPAGAKPGPRPPPPPAPAGAKPGPPPPPPTAPAGAKPGPPPPPPPAPIGAKPGPRPPPPPKSGIGPPRPPPPIGPKVARPLANVEAEAEGEAGAPKAKLKPFFWDKVQANSNHSMVWNQIKSGSFQFNEEMIETFFGYNVVDKNNGQRQKESTSQDPSPQYIQIIDKKKSQNLLILLRALNVTMEEVCDALYEGNELPSEFLQTLLKMAPTSDEELKLRLFSGELSQLGPADRFLKALVDIPFAFKRMEALLFMSTLNEELTITMESFAVLEVTCKELRNSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIKAARAAKESKSSSSIKTDETEDHYREIGLQVVSHLSSELENVKKAAILDADSLTATASKLAHGLIKTKNLVNENMKNVEEDRGFCETTKSFVQNAEIDVMKLMEEEKKIMALVKSTGDYFHGNAGKDEGLRLFVVVRDFLIMLDKVCKEVREAQKRATKTLKQETSRGSSSSETRPPPSDFRQRLFPAIAERRMGDTSSDDESP.	852

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g04937	851	MobiDBLite	consensus disorder prediction	234	248	-	-
	Seca3g04937	851	MobiDBLite	consensus disorder prediction	234	381	-	-
	Seca3g04937	851	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	392	816	IPR015425	-
	Seca3g04937	851	Gene3D	Formin, FH2 domain	397	822	IPR042201	-
	Seca3g04937	851	MobiDBLite	consensus disorder prediction	833	851	-	-
	Seca3g04937	851	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	462	815	-	-
	Seca3g04937	851	MobiDBLite	consensus disorder prediction	801	851	-	-
	Seca3g04937	851	Pfam	Formin Homology 2 Domain	395	790	IPR015425	-
	Seca3g04937	851	PANTHER	FORMIN-RELATED	327	840	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Seca3g04937	851	PRINTS	Proline rich extensin signature	283	299	-	-
	Seca3g04937	851	PRINTS	Proline rich extensin signature	320	345	-	-
	Seca3g04937	851	PRINTS	Proline rich extensin signature	254	275	-	-
	Seca3g04937	851	PRINTS	Proline rich extensin signature	302	319	-	-
	Seca3g04937	851	MobiDBLite	consensus disorder prediction	263	380	-	-
	Seca3g04937	851	MobiDBLite	consensus disorder prediction	810	825	-	-
	Seca3g04937	851	SMART	it6_source	392	805	IPR015425	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g04937	Seca-Chr3	95596463	95603295	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g04937	367	841	FH2 protein (formin) Gene Family	AT5G54650	65.432	0.0	621

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g04937	-		-	gmx:100793413	768.459