LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g04930	ATGGGAATTCAGAAATATATGGTTGCCGTAAAGTTTAGCTTTTGTGTTCTTTTGATTGTTCTTCTTGTAGCAGCAGTAAGCTTTATAGAAAAGAAGGAAACACATGATGAGTTTGTTAGCGAACTATTTGATTCAGCATCTGGATTGTTAGATGAGCACACGGCAAAGGTACTATGGACCACTTGCTGGGAAGATTCAATTCGCTTAAAGAAAGAGGTTGAAGATCATGATTTACGCCTCCCTCAGGAATCATCTGGTAGCACCAATAGAATTAGTTCAGAGATTCAACCATTTGCACGAGCAGACATCCAAAAATTGATTGCTTGCCATCCTCAGTTCAAGGAAAACTTTATTCAGTGTTTGAGAAAAAGTAATCTTCCATTTCGTGTATCAGGAGAAGAGGATGATTCCAAGATATGGCATGTCACTTATATGGGATCACTTTTTTCGAAATCCAGTGTTCCTCGAAGAAATTTGGGTCGTGTTTTGCTTCAGCACATATCAGAACCACCTAGTCCAGGTCCTTCAGTTGGAGCACCTACACCTGAACCCAATTTAGCACCATCACCTGAACCCAGTCTAGCACCATCACCTGCTCCAGTTCCTCTAGGTCCTAAACCTCTGCATCCTCCTTTGTCACCAACCCCTTTTTTCCCAAAACTGACACCACCAGCAATTGCAGATATTTCCTCTCCTCCATCTCCCGTCATTAACAAACAAGAAGATAAGCATAGTAACAGAAGAACAGTTGTTATTGCTGTAGTTATAACTGCATTGGTGACATTCATAGCTGCAGCATTGTTCTTTTTATACTGTAGTGGGTTTTCTAAGACGGGCCGATTTAGGAAAAATGATGAGAGGCCCCTTCTCAGCTTGAGCATGAGCGACTTTTCTGTTGGTCCTTCCAATTATTCTTTTGGAAATTCAATAGAAGGGGAGAAAGTTGGGTTTCAGTCATCCAATGATAATTTACTAGACAACAAGAAGACCTCAGTGCAAGAAAGTCAATCAATAGGAGCTCTTACTACTTCCGGATCACCATTTGAACTGAAACCTCCTCCCGGGAGAGTGGGAACCATACCTTCTGGAATGCCTCCTTTAAAACCTCCTCCTGGAAGGCTGAATCCTCTTCCCCCTGAACCACCTTCATTTAGGCCTTCTGGTAATGCTGCTGTACCTGCTGCTTCTTCTGCTGCTGCTCCTGCACCTCCTCCTCGACAGCCTGGTGTTGGCAGCGCTCCACCTCCTGGTCCTCCTCCACCACCAGCCTCAGCACCAACTAGTACCAGGCCTGGTCCTCCTCCACCACCACCGCCAGCACCAGCTGGTGCCAAACCTGGTCCTCGTCCACCACCACCCCCAGCACCAGCTGGTGCCAAACCTGGTCCTCCTCCTCCTCCACCACCCACAGCTCCAGCTGGTGCCAAACCGGGTCCTCCTCCACCACCACCCCCAGCACCAGTTGGTGCTAAACCTGGTCCTCGTCCACCACCTCCTCCTAAGAGTGGTATAGGTCCTCCTCGACCTCCTCCTCCAATTGGCCCTAAGGTAGCTCGGCCTTTAGCAAATGTTGAGGCTGAGGCAGAAGGTGAAGCTGGTGCTCCTAAAGCCAAGCTAAAGCCTTTCTTCTGGGATAAGGTTCAAGCTAACTCGGATCATTCAATGGTTTGGAATCAGATCAAATCAGGATCATTCCAGTTTAATGAAGAGATGATAGAGACACTTTTTGGCTATAATGCTGTGGATAAAAACAACGGTCAACGGCAGAAAGAGTCTACCTCCCAAGACCCTTCACCTCAATATATCCACATCATTGACAAAAAGAAATCTCAAAATTTATTAATTTTGTTGCGAGCACTGAACGTGACAATGGAAGAAGTTTGTGATGCACTTTATGAAGGAAATGAGCTACCCTCAGAATTCCTTCAAACCTTGCTGAAGATGGCACCAACATCAGATGAAGAACTTAAGCTTAGACTTTTCAGTGGTGAACTGTCTCAACTTGGGCCTGCTGACCGATTCCTGAAAGCCTTGGTTGACATTCCGTTTGCTTTTAAGCGTATGGAAGCACTGCTTTTCATGAGTACACTTAATGAGGAGCTAACTACTACTATGGAGTCTTTTGCAGTTTTAGAGGTTGCTTGTAAGGAACTAAGAAACAGCAGGCTGTTCCTCAAGCTTCTTGAAGCTGTTCTCAAAACTGGTAACCGTATGAATGATGGAACATACCGTGGTGGCGCACAAGCATTTAAACTTGATACACTTTTAAAATTATCTGATGTAAAAGGAACAGATGGCAAAACCACACTCTTACACTTTGTTGTTCAGGAGATTATCCGCTCCGAGGGCATAAAAGCCGCTCGAGCCGCAAAAGAGAGCAAGAGTTCATCTAGTATTAAAACGGATGAAACAGAAGATCACTACCGTGAAATTGGTCTTCAGGTGGTTTCACACTTGAGCAGTGAGCTTGAGAATGTTAAAAAAGCAGCAATTCTAGATGCTGACAGCTTAACAGCAACTGCTTCCAAACTTGCTCATGGTCTCATAAAAACCAAAAACTTGGTAAATGAAAACATGAAGAATGTGGAGGGAGATAGAGGGTTTTGTGAGACAGCAAAAAGTTTTGTGCAGAATGCTGAGGTTGATGTTATGAAACTGATGGAAGAAGAGAAGAAAATCATGGCTCTGGTGAAGAGCACTGGTGATTACTTTCATGGGAATGCTGGGAAGGATGAAGGCTTAAGATTGTTTGTAGTAGTAAGAGACTTCTTAATAATGCTGGATAAGGTATGCAAGGAAGTGAGAGAAGCACAGAAGAGGGCAGCAAAAACTTCAAAACAAGAAACTTCTCGAGGATCATCTTCGTCTGAAACGCGTCCACCACCTTCTGATTTTCGTCAGCGGCTTTTTCCGGCTATAGCTGAAAGGAGGATGGGTGACTCTAGTTCAGATGATGAGAGTCCATAG	2967	0.4459	MGIQKYMVAVKFSFCVLLIVLLVAAVSFIEKKETHDEFVSELFDSASGLLDEHTAKVLWTTCWEDSIRLKKEVEDHDLRLPQESSGSTNRISSEIQPFARADIQKLIACHPQFKENFIQCLRKSNLPFRVSGEEDDSKIWHVTYMGSLFSKSSVPRRNLGRVLLQHISEPPSPGPSVGAPTPEPNLAPSPEPSLAPSPAPVPLGPKPLHPPLSPTPFFPKLTPPAIADISSPPSPVINKQEDKHSNRRTVVIAVVITALVTFIAAALFFLYCSGFSKTGRFRKNDERPLLSLSMSDFSVGPSNYSFGNSIEGEKVGFQSSNDNLLDNKKTSVQESQSIGALTTSGSPFELKPPPGRVGTIPSGMPPLKPPPGRLNPLPPEPPSFRPSGNAAVPAASSAAAPAPPPRQPGVGSAPPPGPPPPPASAPTSTRPGPPPPPPPAPAGAKPGPRPPPPPAPAGAKPGPPPPPPPTAPAGAKPGPPPPPPPAPVGAKPGPRPPPPPKSGIGPPRPPPPIGPKVARPLANVEAEAEGEAGAPKAKLKPFFWDKVQANSDHSMVWNQIKSGSFQFNEEMIETLFGYNAVDKNNGQRQKESTSQDPSPQYIHIIDKKKSQNLLILLRALNVTMEEVCDALYEGNELPSEFLQTLLKMAPTSDEELKLRLFSGELSQLGPADRFLKALVDIPFAFKRMEALLFMSTLNEELTTTMESFAVLEVACKELRNSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIKAARAAKESKSSSSIKTDETEDHYREIGLQVVSHLSSELENVKKAAILDADSLTATASKLAHGLIKTKNLVNENMKNVEGDRGFCETAKSFVQNAEVDVMKLMEEEKKIMALVKSTGDYFHGNAGKDEGLRLFVVVRDFLIMLDKVCKEVREAQKRAAKTSKQETSRGSSSSETRPPPSDFRQRLFPAIAERRMGDSSSDDESP.	989

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g04930	988	MobiDBLite	consensus disorder prediction	398	517	-	-
	Seca3g04930	988	MobiDBLite	consensus disorder prediction	358	386	-	-
	Seca3g04930	988	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	529	953	IPR015425	-
	Seca3g04930	988	MobiDBLite	consensus disorder prediction	329	344	-	-
	Seca3g04930	988	MobiDBLite	consensus disorder prediction	939	988	-	-
	Seca3g04930	988	PANTHER	FORMIN-RELATED	22	984	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Seca3g04930	988	Gene3D	Formin, FH2 domain	534	959	IPR042201	-
	Seca3g04930	988	MobiDBLite	consensus disorder prediction	947	962	-	-
	Seca3g04930	988	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	599	952	-	-
	Seca3g04930	988	Coils	Coil	927	947	-	-
	Seca3g04930	988	MobiDBLite	consensus disorder prediction	329	518	-	-
	Seca3g04930	988	SMART	it6_source	529	942	IPR015425	-
	Seca3g04930	988	MobiDBLite	consensus disorder prediction	166	208	-	-
	Seca3g04930	988	Pfam	Formin Homology 2 Domain	532	927	IPR015425	-
	Seca3g04930	988	MobiDBLite	consensus disorder prediction	970	988	-	-
	Seca3g04930	988	MobiDBLite	consensus disorder prediction	173	208	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g04930	Seca-Chr3	95432929	95438697	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g04930	469	978	FH2 protein (formin) Gene Family	AT5G54650	62.188	0.0	607

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g04930	-		-	gmx:100793413	763.451