Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04923 ATGGTTTCCCGGGAAAACACCAATTGGCTTTTCGATTACGCCTTGATCGATGATATTTCCGTAACCGATGCCACCTTTACTGTCCCTTCCTCCGGATTCACCTGGACCTCGCAGCCCTTGAATGCTTCTTCGAATGTCGGTGTTGAAGCTGATGGCTCATTGGGGGATTCTGATGGTGTCAAAGAGTCTGGTTCAAAGAAGAGGGTTAGATCTGAGTCATGTGCTGCTTCTAGCTCCAAGGCATGTCGTGAGAAGTTGCGTAGAGATAAGCTTAATGACAAGTGGATTTTGTGTAAATGTGTGGCTGGGGCACCTAATATGATGGACATGGTTAGGTTTGTTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCTACCAAAACAGACAAGGCTGCTATCCTGATTGATGCTGTCCGAATGGTGACACAGTTACGTGGTGAAGCCCAGAAGTTGAAAGACACTAATTTGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTCAAGGCAGAGAAAGAGAGGTTGGAGCAGCAGCTGAAATCTATGAATGCACAACCTAGTTTCTTGCCTCCCCCCGCTGCACTCCCTGCTGCATTTGCTGCACAAGGGCAAACCCATGGCAACAAGTTGGTACCTTTTATCAGTTATCCAGGAGTTGCAATGTGGCAATTCATGCCACCTGCTGCAGTTGATACCTCACAGGATCATGTACTTCGTCCACCAGTTGCCTAA 765 0.4706 MVSRENTNWLFDYALIDDISVTDATFTVPSSGFTWTSQPLNASSNVGVEADGSLGDSDGVKESGSKKRVRSESCAASSSKACREKLRRDKLNDKWILCKCVAGAPNMMDMVRFVELGSILEPGRPTKTDKAAILIDAVRMVTQLRGEAQKLKDTNLGLQEKIKELKAEKNELRDEKQRLKAEKERLEQQLKSMNAQPSFLPPPAALPAAFAAQGQTHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04923 254 CDD bHLH_AtILR3_like 80 173 - -
Seca3g04923 254 Gene3D - 76 171 IPR036638 GO:0046983
Seca3g04923 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 163 IPR036638 GO:0046983
Seca3g04923 254 Coils Coil 141 196 - -
Seca3g04923 254 PANTHER BHLH TRANSCRIPTION FACTOR 3 254 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Seca3g04923 254 MobiDBLite consensus disorder prediction 46 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04923 Seca-Chr3 95338453 95343083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04923 1 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 66.148 2.70e-111 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g04923 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04923 - - gmx:100788858 388.267