Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04915 ATGGCAATGACAATCGCTTACAACGACACCGAAAGCAACTCTTCTTCAGCTCAGGTGATAAAGAAATATGATGTGTTTGTGAGCTTCAGAGGTGAAGACACACGAAACAACTTCACTAATCATCTCTTTGGTGCCCTCGAAAGAAACGGCATCATTCCCTTTAAGGATAACGAAAACATCAGGAAAGGTGGATCCTTAGAACCTGAACTCCTACAAGCAATTGAAGGGTCTCGTGTTTTGGTTGTTGTCTTCTCAAAGAAATATGCTTCCTCAAAGTGGTGCTTGCGAGAACTAGTAAAGATCCACGATTGCATTCAAGTACCAGGAAAAAGCGTTCTACCTATTTTCTACGATGTGGATCCATCTCATGTGCGAAATCAGAGCGGGGATTATGAGGAAGCATTTGCCAAATATAAAGAAACCTTCAAAGAGGAAATGTTGAGATGGAGGGAAGCTCTCACACAAATAGCCACTCTCTCTGGTTGGGATCTACGGAATAAGGCAGAATATGCAGAAATTGAACATATTGTTAAAGAGATAATTAGTTTATTGGGATATCGCGAACTTTCAATTCTTCCGAAGGATCTAGTTGTCCCGCATTCTCATATAGAACAATTAGAAAAGCTTCTACTTGTGGGCTCAGTTGATGATGTTCGAGTTGTAGGAATTTGTGGGATGGGTGGAATAGGAAAGTCAACTCTTGTTACAGCTTTATGTGAAAGAATCTCTTGTCAATTTGATGCCTGCTATTCTATTGATGTGAGCAAAATGAATAGAGATCATGATCCAATTGGTGCACGAAAGCGAATTCTACAATCTCTAAATGGAGAAAACCTTCAAATACAGAATCGTGGTAATATTGCACCTACTTTGGTACGAAGTAGGCTACATTGTATAAGGGCTCTTTTAGTTCTTGATAATGTTCATCAAGTTGAAGAACTAGTGAATCGTGAATGGTTTGGTGCAGGGAGTAGAATCATAATAGTCTCTAGAAATGAGCATATCTTGAAAGGGTATGGAGTGGATGAAGTTTACAGAGTTCCACTTTTAAATTGGGATTACTCTCGCCAATTATTTTGTAGAAAAGCTTTCAAATGTGATGGTATTTTGACAAATTATGAGAAGTTGACATATGATATACTGGAATATGCTAATGGCCACCCATTGGCAATTAAAGTATTGGGCTCATCTTTGTTAGGCCGAGATGTCTCTATATGGAGAAGCGCATTGGCTAGATTAAAGAAAAATCCAAACAAAGATATCATGGATGTTCTGCGATTAAGTTTTGACGGGCTAGAAGATGAGGAAAAGGAAATATTTTTAGATATTGCGTGTTTCTTCAACTGGGATTGTAAAGAGCATTATGTTAAAAAAGTTCTAAATTGTTGTGGGTTTCATGCCGATATTGGATTAAGAGAACTAGTTGATAAATCACTCATCAGCATAGAGTACAACTGGCAAGTTGGTGACACCTTAATTGAAATGCATGGTTTACTGCAAGAGCTGGGTAGAAAAATTGTTCAAGAAAACTCAATCCAAAAGTCAAGAAAGTGGAGCAGACTATGGCGCAACAAACATTTCAAGAATGTCATGTTGGAGAATATGGAAAAGAACGTTGAAGTCATAGGTGAACCTCAGAGATGTTTTGCACACACAGAGGAAAAATATAGGATTGAGGCTGAAACATTGTCCAAAATGAGCCATCTTAGATTGCTTATACTTAGCTACGGAGGGGATATTTCAGGAAGTCTCAATCGCCTTTCAGATGAAATAAGATATTTTGAGTGGTCTAAATGTCCCCTGTTGTATTTGCCATCAGACTTTCAACCGACTCAACTTGTTGAATTGATCTTGAAGTGGAGCAACATCAAACAACTATGGGAAGGCAAGAAGTATCTACCCAATTTGAAGAATCTGGATCTACACGAATCCAAAAATCTAATCAAGTTGCCAGATTTTCGAGAAATGCCAAATCTGGTGCGGCTAAATGTTGAAGGATGTTCAAAACTGGTGGAGATACATCCATCTATTGGTGTTCTAAAAAAGCTTGTTTTTTTCAATTTGAAAGACTGCAAAAGTCTAGTAACTATACCCAACAACATACTGGGACTAGATTCTCTTGAATATCTAAATCTGTCAGGTTGCTCAAAAGTGTTTAACAGCCCAAGGCAAGTGAAGCTTGATATAGCCAAATGGATTGTGTGGCCTTTCCAATTCTTGTATCCCAGAGCACACGATGATTCAGTTAGTTGTTCGAGTCCTTCCTTGCCTAGCTTCTTTCATTTGCGGGATCTTGATCTAAGCTTCTGCAATCTACCCCAACTCCCTGATGCTATTGGAAGTTTGCATTGTTTAGAAACCTTAAATTTAACAGGACAAAATTTTGTTACACTGCCTAGCCTCAAGGAACTTTCCAGACTTGTATATTTAAACTTGCAGCATTGTAAGCAGTTGGAAATTTTGCCTGATCTCCCTTCAAATACTTGTGTGCCAATAAGAAAAGGAATCCCTCAGCCTATGGATCCAGGTCTATATATTTTCAACTGTCCTAAATTGGGTGAGAGGGAATGCTACAAAAGCATGACTTATTCATGGATGAAACGACTCATTCAGGCATACCAAGAATTGTTTGTCCCTTATAGGAAGATTGATATTGTTATTCCTGGAGGTGATATACCAAAGTGGTTCAACAATCAGAGCGTGGGTAGTGATGGTGAAATTACTTTAGACCTACCTTCAGTTATGCATGACAATAACTGGATTGGCATGGTTTATTGTATGGTATTTGTGGCAGTGCCTCTTCCTGGACCAACTGGATGGGAACCCAGCGTATACATGTATATTTCAGATGAAATAGCATCTAGTCTTTTCGAGCCTAAGTTAATTCTAAATAGAGACCTTATCTCAGTTGAATTAAACCACATATGTCTAATGTATATCAATCGGCAAGAATTCTTTTCTTGGGTGGAACATTTAAATAGCACACCCAGACCTCCATGTCTCACTGATCTCAAAATGCATGTTAAAGCCCGTAGTGACCAAAGTTTGCATCTTGAGGTGAAGAATTTTGGGTGGCGTTGGCTATTCAAACAGGATCTAGAGCCATTTGACTTATCATTGGTACATAGCGGAAATTCACCAGCCCAGTTTTTGGAAATTGAAGACTCTGCACAATCACAACCCACAATCATTGATAGAAAAGTTGTCTGA 3210 0.3866 MAMTIAYNDTESNSSSAQVIKKYDVFVSFRGEDTRNNFTNHLFGALERNGIIPFKDNENIRKGGSLEPELLQAIEGSRVLVVVFSKKYASSKWCLRELVKIHDCIQVPGKSVLPIFYDVDPSHVRNQSGDYEEAFAKYKETFKEEMLRWREALTQIATLSGWDLRNKAEYAEIEHIVKEIISLLGYRELSILPKDLVVPHSHIEQLEKLLLVGSVDDVRVVGICGMGGIGKSTLVTALCERISCQFDACYSIDVSKMNRDHDPIGARKRILQSLNGENLQIQNRGNIAPTLVRSRLHCIRALLVLDNVHQVEELVNREWFGAGSRIIIVSRNEHILKGYGVDEVYRVPLLNWDYSRQLFCRKAFKCDGILTNYEKLTYDILEYANGHPLAIKVLGSSLLGRDVSIWRSALARLKKNPNKDIMDVLRLSFDGLEDEEKEIFLDIACFFNWDCKEHYVKKVLNCCGFHADIGLRELVDKSLISIEYNWQVGDTLIEMHGLLQELGRKIVQENSIQKSRKWSRLWRNKHFKNVMLENMEKNVEVIGEPQRCFAHTEEKYRIEAETLSKMSHLRLLILSYGGDISGSLNRLSDEIRYFEWSKCPLLYLPSDFQPTQLVELILKWSNIKQLWEGKKYLPNLKNLDLHESKNLIKLPDFREMPNLVRLNVEGCSKLVEIHPSIGVLKKLVFFNLKDCKSLVTIPNNILGLDSLEYLNLSGCSKVFNSPRQVKLDIAKWIVWPFQFLYPRAHDDSVSCSSPSLPSFFHLRDLDLSFCNLPQLPDAIGSLHCLETLNLTGQNFVTLPSLKELSRLVYLNLQHCKQLEILPDLPSNTCVPIRKGIPQPMDPGLYIFNCPKLGERECYKSMTYSWMKRLIQAYQELFVPYRKIDIVIPGGDIPKWFNNQSVGSDGEITLDLPSVMHDNNWIGMVYCMVFVAVPLPGPTGWEPSVYMYISDEIASSLFEPKLILNRDLISVELNHICLMYINRQEFFSWVEHLNSTPRPPCLTDLKMHVKARSDQSLHLEVKNFGWRWLFKQDLEPFDLSLVHSGNSPAQFLEIEDSAQSQPTIIDRKVV. 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04915 1069 Pfam C-JID domain 887 1034 IPR045344 -
Seca3g04915 1069 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 723 IPR044974 GO:0006952
Seca3g04915 1069 Gene3D Ribonuclease Inhibitor 744 869 IPR032675 -
Seca3g04915 1069 Gene3D Ribonuclease Inhibitor 514 729 IPR032675 -
Seca3g04915 1069 Gene3D - 350 433 IPR042197 -
Seca3g04915 1069 ProSiteProfiles TIR domain profile. 21 184 IPR000157 GO:0007165
Seca3g04915 1069 PRINTS Disease resistance protein signature 295 309 - -
Seca3g04915 1069 PRINTS Disease resistance protein signature 384 398 - -
Seca3g04915 1069 PRINTS Disease resistance protein signature 220 235 - -
Seca3g04915 1069 PRINTS Disease resistance protein signature 631 647 - -
Seca3g04915 1069 Gene3D - 18 188 IPR035897 -
Seca3g04915 1069 SUPERFAMILY L domain-like 563 825 - -
Seca3g04915 1069 SMART till_3 22 159 IPR000157 GO:0007165
Seca3g04915 1069 Pfam TIR domain 22 180 IPR000157 GO:0007165
Seca3g04915 1069 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 162 IPR035897 -
Seca3g04915 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 443 IPR027417 -
Seca3g04915 1069 Gene3D - 189 342 IPR027417 -
Seca3g04915 1069 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 185 - -
Seca3g04915 1069 Pfam NB-ARC domain 202 418 IPR002182 GO:0043531
Seca3g04915 1069 SUPERFAMILY "Winged helix" DNA-binding domain 420 527 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04915 Seca-Chr3 95199090 95203771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04915 21 831 WRKY Transcription Factor Family AT4G12020 30.572 1.40e-82 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04915 - - gmx:100820213 1028.85