Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04912 ATGGGGAACAATAGCATGTTTCGTTATGCAGATGGAATAGATAAGTTGTTGATGTTATTTGGGACCCTGGGAAGCCTTGGAGATGGACTGCAGAACCCTCTCATGATGTACATTCTTAGTGATGTGATCAACGCCTATGGAGACAAGAATAGCACTATGACAAAGCATGATGTGAACAAGTTTGCATTGAGGCTTTTATATGTTGCAATTGGAGTTGGACTTTCAGCTTTTATTGAAGGAATATGTTGGACAAGAACAGCTGAGAGACAGACTTCCAGAATGAGAATGGAATACCTAAAATCAGTCCTAAGACAAGAAGTTGGTTTCTTTGACACCCAGACTGATGGTTCTTCAACAACCTACAAAGTTGTCTCTCTCATCTCCTCAGATGCAAATACAGTCCAAGTTGCCTTAAGTGAGAAGATACCTGATTGCCTGGCTTACATGTCAACATTCTTATTCTGCCACATCTTTGCATTTGTACTTTCATGGAGACTTGCATTGGCAGCCATACCACTCTCTGTCATGTTCATTGTTCCAGCACTTATATTTGGGAAGATCATGTTGGATGTCACAATGAAAATGATTGAGTCATATGGGGTTGCCGGTGGGATTGCAGAACAAGCAATATCTTCAATAAGAACTGTTTATTCTTATGTTGGGGAGAATCAAACTCTGAACAGATTTAGCAGTGCACTTCAAAAAACTATGGAGTTTGGAATAAAGCAAGGTTTTGCAAAGGGGTTGATGTTAGGAAGCATGGGAGTTATTTACATAAGTTGGGGTTTTCAGGCTTGGGTTGGAACTTTTCTTATCACTGAAAAAGGAGAAAAAGGTGGCCATGTATTTGTGGCTGGCTTCAACATCCTCATGGGAGGGCTGAGCATTTTAAGTGCCCTTCCAAATTTAACTGCCATCACAGAGGCAACTGCTGCTGTCACTCGTCTTTTTGAAATGATTGATAGGGTGCCAACTATAGATTCTGAAGAAAAGAAAGGAAAGGCTTTGTCACATGTGAGAGGAGAAATTGAATTTAAAGACATCTACTTTTGTTACCCATCTAGGCCAGATTCACCAATCTTGCAGGGATTCAATCTCACTATTCCAGCAGGCAAGAGTGTAGGCCTTGTGGGGGGAAGTGGTTCAGGAAAATCCACTGTAATTGCATTGCTTGAAAGGTTTTATGACCCTGTTGAGGGAGAAATACTCTTGGATGGCCACAAGATTAATAGACTTCAATTGAAATGGTTGAGATCTCATCTTGGCCTAGTAAATCAAGAGCCTGTTCTTTTTGCCACATCCATAAAAGAGAATATTTTGTTTGGAAAAGAAGGGGCTTCAATGGAAAATGTGATAAGTGCAGCTAAAGCAGCAAATGCACATGATTTCATTGTCAAGTTACCAGATGGATATGAAACTCAAGTTGGGCAGTTTGGATTTCAATTGTCTGGAGGGCAGAAGCAGCGCATTGCCATAGCAAGAGCTTTACTAAGGGATCCAAAGGTTCTCCTCCTTGATGAAGCAACCAGTGCACTTGATGCTCAATCTGAAAGAGTGGTACAAGCAGCAATTGATCAAGCTTCAAAAGGAAGGACAACAATCATCATTGCTCACCGCTTGTCTACAATAAGGACAGCTAACCTTATTGCTGTCCTTCAAGCAGGGAGAGTGATTGAATTAGGTACTCATAATGAGCTCATGGAAATGAATGATGGACAAGGTGGTGAATATGCTCGTATGGTAGAGTTGCAGCAAGTAACAACTCAGAATGATGAATCCAAATATTCCAATCTTCAAATAGAAGGAAAGAGCTCCCACAGCCACAGGATGAGCATTCCTCAAAGTCCAGGGGTAAGTTTCAGATCAAGCACAACAGGCACTCCAATGTTGTATCCCTTCAGCCAGGGATTTTCTGTAGGCACACCTTACTCCTACTCCATCCAATATGACCCTGATGATGATAGCTATGAAGATAACTTGAAAAGATCAAATTATCCAGCTCCTTCACAGTGGCGTTTACTGAAAATGAATGCACCTGAGTGGGGAAGAGCAGTGCTAGGAATCTTGGGAGCAATAGGCTCAGGAGCAGTACAACCTGTAAATGCATACTGTGTGGGGATACTCATATCAGTTTATTTTTATACTGATCACTCTGAGATGAAGAAAAAAGCTAGAGTCCTGGCCCTCATTTTCTTAGGAATTGGTGTTTTTAACTTCTTCACTAGTATTCTCCAACACTATAATTTTGCAGTTATGGGAGAAAGGTTGACTAAAAGAATAAGAGAGAAAATACTAGAAAAGTTGATGACTTTTGAGATAGGATGGTTTGATAATGAAGAGAACACAAGTGCATCCATTTGTGCAAGATTATCCTCTGAAGCCAACTTGGTTCGTTCCCTTGTTGGTGACAGGATGTCTTTGTTGGCTCAAGCTGTTTTTGGGTCTGTCTTTGCTTACACTCTAGGACTTGTGCTCACATGGAGGCTTTCTCTTGTGATGATTGCAGTGCAGCCATTAGTCATTGGAAGCTTTTATTCAAGAAGTGTCTTGATGAAGGGTATGGCAGAAAAAGCTCGTAAAGCACAAAGGGAAGGAAGCCAGCTTGCAAGTGAAGCTGTTATAAACCACAGAACCATAACGGCTTTCAGTTCTCAGAAAAGAATGTTGGCACTCTTCAAATCTACAATGGTAGGCCCTAAAAAAGAGAGTATTAGGCAGTCATGGATTTCAGGCTGTGGTCTTTTCAGCTCCCAATTTTTCAACACTGCATCAACAGCATTGGCTTACTGGTATGGTGGGATGCTCCTGATACATGGACACATAGAACCAAAGCATCTCTTCCAAGCATTTTTAATATTGCTTTTCACTGCATACATCATTGCAGAAGCTGGAAGCATGACTTCTGACTTATCTAAAGGAAGCAGTGCAGTTGGATCAGTTTTTGCTATCCTTGATAGGAAAACTGAGATTGATCCTGAGACATCATGGGGAGGAGACAAAAGAAGGAAAATAAGGGGCAGAGTGGAGCTTAAGAGTGTGTACTTTGCTTATACAACTAGACCTGACCAAATGATATTCCAGGGTCTGAATCTTAAAGTTGAGGCTGGGAGAACAGTAGCACTAGTGGGGCATAGTGGTTGTGGTAAATCAACTATCATTGGTCTAATTGAAAGGTTTTATGATCCTGTCAAGGGAACTGTATGCATTGATGAACAAGACATCAAGTCATATAATTTGAGAATGCTGAGGTCACATATTGCATTGGTAAGTCAGGAGCCAACACTTTTCAGTGGAACCATTCGAGAAAACATTGCCTATGGGAAAGAAAATGCAACTGAATCTGAGATAAGAAGGGCTGCAACTCTGGCTAATGCTCATGAATTCATAAGTGGAATGAATGATGGGTATGAGACATACTGTGGAGAAAGAGGAGTTCAGTTATCAGGAGGTCAGAAACAAAGAATAGCCTTAGCTCGGGCCATACTGAAGAATCCTGCAATTCTTCTACTAGATGAGGCTACAAGTGCACTTGACAGTGTGTCAGAGATTTTGGTACAAGAAGCACTTGAGAAGATAATGGTTGGAAGAACATGCATAGCAGTGGCACACAGGCTATCTACAATACAAAAATCCAACTCCATTGCAGTGATTAAGAACGGGAAGGTTGTGGAACAGGGTTCACATAACGAATTGATTTCCCTTGGACGTAATGGAGCATACTATTCTCTTGTTAAACTTCAAAGTGGCAGCTCTCCCCCTAGGTGA 3765 0.4125 MGNNSMFRYADGIDKLLMLFGTLGSLGDGLQNPLMMYILSDVINAYGDKNSTMTKHDVNKFALRLLYVAIGVGLSAFIEGICWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQTDGSSTTYKVVSLISSDANTVQVALSEKIPDCLAYMSTFLFCHIFAFVLSWRLALAAIPLSVMFIVPALIFGKIMLDVTMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTLNRFSSALQKTMEFGIKQGFAKGLMLGSMGVIYISWGFQAWVGTFLITEKGEKGGHVFVAGFNILMGGLSILSALPNLTAITEATAAVTRLFEMIDRVPTIDSEEKKGKALSHVRGEIEFKDIYFCYPSRPDSPILQGFNLTIPAGKSVGLVGGSGSGKSTVIALLERFYDPVEGEILLDGHKINRLQLKWLRSHLGLVNQEPVLFATSIKENILFGKEGASMENVISAAKAANAHDFIVKLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIRTANLIAVLQAGRVIELGTHNELMEMNDGQGGEYARMVELQQVTTQNDESKYSNLQIEGKSSHSHRMSIPQSPGVSFRSSTTGTPMLYPFSQGFSVGTPYSYSIQYDPDDDSYEDNLKRSNYPAPSQWRLLKMNAPEWGRAVLGILGAIGSGAVQPVNAYCVGILISVYFYTDHSEMKKKARVLALIFLGIGVFNFFTSILQHYNFAVMGERLTKRIREKILEKLMTFEIGWFDNEENTSASICARLSSEANLVRSLVGDRMSLLAQAVFGSVFAYTLGLVLTWRLSLVMIAVQPLVIGSFYSRSVLMKGMAEKARKAQREGSQLASEAVINHRTITAFSSQKRMLALFKSTMVGPKKESIRQSWISGCGLFSSQFFNTASTALAYWYGGMLLIHGHIEPKHLFQAFLILLFTAYIIAEAGSMTSDLSKGSSAVGSVFAILDRKTEIDPETSWGGDKRRKIRGRVELKSVYFAYTTRPDQMIFQGLNLKVEAGRTVALVGHSGCGKSTIIGLIERFYDPVKGTVCIDEQDIKSYNLRMLRSHIALVSQEPTLFSGTIRENIAYGKENATESEIRRAATLANAHEFISGMNDGYETYCGERGVQLSGGQKQRIALARAILKNPAILLLDEATSALDSVSEILVQEALEKIMVGRTCIAVAHRLSTIQKSNSIAVIKNGKVVEQGSHNELISLGRNGAYYSLVKLQSGSSPPR. 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04912 1254 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524
Seca3g04912 1254 FunFam Putative ABC transporter B family member 8 648 995 - -
Seca3g04912 1254 CDD ABC_MTABC3_MDL1_MDL2 343 584 - -
Seca3g04912 1254 ProSitePatterns ABC transporters family signature. 482 496 IPR017871 GO:0005524|GO:0016887
Seca3g04912 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1008 1244 IPR003439 GO:0005524
Seca3g04912 1254 Pfam ABC transporter 361 510 IPR003439 GO:0005524
Seca3g04912 1254 Gene3D ABC transporter type 1, transmembrane domain 65 912 IPR036640 GO:0005524|GO:0016020
Seca3g04912 1254 CDD ABC_6TM_Pgp_ABCB1_D2_like 674 990 - -
Seca3g04912 1254 SMART AAA_5 1035 1227 IPR003593 GO:0016887
Seca3g04912 1254 SMART AAA_5 370 562 IPR003593 GO:0016887
Seca3g04912 1254 FunFam ABC transporter B family member 15-like 6 343 - -
Seca3g04912 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 584 IPR027417 -
Seca3g04912 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 343 579 IPR003439 GO:0005524
Seca3g04912 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1003 1247 IPR027417 -
Seca3g04912 1254 FunFam ABC transporter B family member 4 998 1251 - -
Seca3g04912 1254 SUPERFAMILY ABC transporter transmembrane region 671 991 IPR036640 GO:0005524|GO:0016020
Seca3g04912 1254 Gene3D - 998 1251 IPR027417 -
Seca3g04912 1254 MobiDBLite consensus disorder prediction 601 621 - -
Seca3g04912 1254 SUPERFAMILY ABC transporter transmembrane region 7 327 IPR036640 GO:0005524|GO:0016020
Seca3g04912 1254 PANTHER ABC TRANSPORTER B FAMILY 5 743 IPR039421 -
Seca3g04912 1254 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 316 - -
Seca3g04912 1254 Gene3D - 341 597 IPR027417 -
Seca3g04912 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 685 972 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g04912 1254 FunFam ABC transporter B family member 19 333 585 - -
Seca3g04912 1254 CDD ABC_MTABC3_MDL1_MDL2 1008 1247 - -
Seca3g04912 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 308 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g04912 1254 Pfam ABC transporter transmembrane region 18 293 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g04912 1254 Pfam ABC transporter transmembrane region 686 957 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g04912 1254 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04912 Seca-Chr3 95125459 95131772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04912 3 587 Calmodulin-binding Proteins AT2G36910 36.394 4.20e-105 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04912 K05658 - gmx:100788127 2248.01